View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12493_low_6 (Length: 422)

Name: NF12493_low_6
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12493_low_6
NF12493_low_6
[»] chr7 (6 HSPs)
chr7 (184-403)||(33756813-33757032)
chr7 (1-156)||(33756658-33756815)
chr7 (1-110)||(6689116-6689225)
chr7 (1-110)||(6693866-6693975)
chr7 (1-96)||(31760742-31760839)
chr7 (3-68)||(27222203-27222270)
[»] chr6 (4 HSPs)
chr6 (1-110)||(799601-799710)
chr6 (1-110)||(8274833-8274942)
chr6 (1-110)||(8270117-8270226)
chr6 (1-110)||(794846-794955)
[»] chr5 (4 HSPs)
chr5 (1-110)||(42839353-42839462)
chr5 (1-110)||(19941062-19941170)
chr5 (1-110)||(19945816-19945924)
chr5 (53-106)||(7739912-7739965)
[»] chr4 (3 HSPs)
chr4 (1-111)||(42176963-42177073)
chr4 (1-110)||(11891396-11891505)
chr4 (10-110)||(11906374-11906471)
[»] chr8 (1 HSPs)
chr8 (16-110)||(26199837-26199931)
[»] chr1 (2 HSPs)
chr1 (1-110)||(31178259-31178370)
chr1 (13-71)||(11400394-11400451)
[»] chr2 (2 HSPs)
chr2 (1-87)||(37568956-37569044)
chr2 (10-87)||(31582832-31582909)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 184 - 403
Target Start/End: Original strand, 33756813 - 33757032
Alignment:
Q  184 ttcacatatttgaaattgtagcctttcacactgaattgctacatgtgtttcaagttgtatgcagctacatagtacagtcaaactaaacttcgatttagac 283  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33756813 ttcacgtatttgaaattgtagcctttcacactgaattgctacatgtgtttcaagttgtatgcagctacatagtacagtcaaactaaacttcgatttagac 33756912  T
Q  284 tttgaaaatttattgaattctattgcgtatactcaaatatggactaatctaaatatacaatacattgacataaattctggatcagaggtatgtacatttg 383  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33756913 tttgaaatttttttgaattctattgcgtatactcaaatatggactaatctaaatatataatacattgacataaattctggatcagaggtatgtacatttg 33757012  T
Q  384 tgaaacttaaaccacctaaa 403  Q
    ||||||||||||||||||||    
T  33757013 tgaaacttaaaccacctaaa 33757032  T

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Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 33756658 - 33756815
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33756658 agagtaggtattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 33756757  T
Q  101 agtttcctaattattaata--ctctgatattgtgttttcaaaatgaaaattggctttc 156  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  33756758 agtttcctaattattaatactctctgatattgtgttttcaaaatgaaaattggctttc 33756815  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6689116 - 6689225
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||| |||||||||||||||| | ||| |||||    
T  6689116 agagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccgcatttatttctcttccacttaatctgactatgggaatattgtgcat 6689215  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  6689216 agtttcctaa 6689225  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6693866 - 6693975
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||  | ||| ||| |    
T  6693866 agagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaatctgactatggaaatattgtgcct 6693965  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  6693966 agtttcctaa 6693975  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31760742 - 31760839
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgtta--ttatttcgcatttatttcacttccatttaatctgactatggggaaatttt 96  Q
    |||||||  ||||||||| |||||||||||| || ||||||| |||  ||||| ||||||||||| ||||||| ||||| | |||||| | |||||||    
T  31760742 agagtagatattattggctgaacttcgttaacaaatttgtgtcttatgttattccgcatttattttacttccacttaatttaactatgagaaaatttt 31760839  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 27222203 - 27222270
Alignment:
Q  3 agtagggattattggccgaacttcgttaagaattttgtgtgt--tattatttcgcatttatttcactt 68  Q
    |||||| || ||||| ||||||||||||  ||||||||||||  ||||||| ||||||||||||||||    
T  27222203 agtaggcataattggtcgaacttcgttatcaattttgtgtgtgctattattccgcatttatttcactt 27222270  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 799710 - 799601
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |    
T  799710 agagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaatctgactatggggaaattgtgcct 799611  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  799610 agtttcctaa 799601  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8274833 - 8274942
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |    
T  8274833 agagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaatctgactatggggaaattgtgcct 8274932  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  8274933 agtttcctaa 8274942  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8270117 - 8270226
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||||||  |||||||||||||||||| |||||||||||||||||||||| ||| |    
T  8270117 agagtaggcattattggccgaacttcgttaacaattttgtgtcttattattctgcatttatttcacttccacttaatctgactatggggaaattgtgcct 8270216  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  8270217 agtttcctaa 8270226  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 794955 - 794846
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||| | ||||||||||||||||| ||||||||| |||||||||||| ||| |    
T  794955 agagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccacatttatttcacttccacttaatctgattatggggaaattgtgcct 794856  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  794855 agtttcctaa 794846  T

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Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 42839353 - 42839462
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||||||||| |    
T  42839353 agagtaggtattattggccgaacttcgttaacaactttgtgtgttattattccgcatttatttcacttccacttaatttgactatgggtaaattttgcgt 42839452  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  42839453 agtttcctaa 42839462  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19941062 - 19941170
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| |    
T  19941062 agagtaggcattattggccaaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaatctgactat-gggaaattgtgcct 19941160  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  19941161 agtttcctaa 19941170  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19945816 - 19945924
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| |    
T  19945816 agagtaggcattattggccaaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaatctgactat-gggaaattgtgcct 19945914  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  19945915 agtttcctaa 19945924  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 7739912 - 7739965
Alignment:
Q  53 cgcatttatttcacttccatttaatctgactatggggaaattttgcatagtttc 106  Q
    ||||||||||| ||||||||||||| |||||||||  |||| ||||||||||||    
T  7739912 cgcatttatttaacttccatttaatttgactatggacaaatcttgcatagtttc 7739965  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 42176963 - 42177073
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||||||||  |||||||||||||||| |||||||||||||| ||||||| ||| |    
T  42176963 agagtaggcattattggccgaacttcgttaataattttgtgtcttattatttcatatttatttcacttccacttaatctgactatgaggaaattgtgcgt 42177062  T
Q  101 agtttcctaat 111  Q
    |||||||||||    
T  42177063 agtttcctaat 42177073  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 11891505 - 11891396
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcat 100  Q
    |||||||| |||||||| ||||||||| ||| |||||| ||||||||||||  |||||||||||||||||| |||||||||||||| ||||||||||| |    
T  11891505 agagtaggtattattggacgaacttcgctaacaattttttgtgttattattctgcatttatttcacttccacttaatctgactatgaggaaattttgcgt 11891406  T
Q  101 agtttcctaa 110  Q
    ||||||||||    
T  11891405 agtttcctaa 11891396  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 11906471 - 11906374
Alignment:
Q  10 attattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcatagtttccta 109  Q
    ||||||||||||||||| |||| ||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  11906471 attattggccgaacttcattaacaattttgtgtgttattattccgcattt---tcacttccacttaatctgactatggggaaattttgcgtagtttccta 11906375  T

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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 26199837 - 26199931
Alignment:
Q  16 ggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcatagtttcctaa 110  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  26199837 ggccgaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaatctgactatggggaaattgtgcctagtttcctaa 26199931  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31178370 - 31178259
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgttat---tatttcgcatttatttcacttccatttaatctgactatggggaaattttg 97  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||   |||| ||||||||||| ||||||| || ||||||| ||||||||||||||    
T  31178370 agagtaggcattattggccgaacttcgttaacaattttgtgtgttattattattccgcatttattttacttccactt-atctgacaatggggaaattttg 31178272  T
Q  98 catagtttcctaa 110  Q
    | |||||||||||    
T  31178271 cgtagtttcctaa 31178259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 11400451 - 11400394
Alignment:
Q  13 attggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttcca 71  Q
    |||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  11400451 attgaccgaacttcgttaacaattt-gtgtgttattattccgcatttatttcacttcca 11400394  T

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Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37568956 - 37569044
Alignment:
Q  1 agagtagggattattggccgaacttcgttaagaattttgtgtgt--tattatttcgcatttatttcacttccatttaatctgactatgg 87  Q
    |||||||| ||||||||||||| ||| |||| ||||||||||||  ||||||| ||||||||||||||||||||||||| |||||||||    
T  37568956 agagtaggcattattggccgaatttcattaacaattttgtgtgtgctattattccgcatttatttcacttccatttaatttgactatgg 37569044  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 31582909 - 31582832
Alignment:
Q  10 attattggccgaacttcgttaagaattttgtgtgttattatttcgcatttatttcacttccatttaatctgactatgg 87  Q
    ||||||| ||||||||| |||| ||||||||||||||||||| |  |||||||||||||||| |||||||||||||||    
T  31582909 attattgaccgaacttcattaacaattttgtgtgttattattccatatttatttcacttccacttaatctgactatgg 31582832  T

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