View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12493_low_9 (Length: 323)
Name: NF12493_low_9
Description: NF12493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12493_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 46471535 - 46471243
Alignment:
| Q |
17 |
attttcagcaacctataacataaaataaggttaatgcggaaatatgtattctgagtgcatatccctatcacatttatgtttcttgatgatggctaatttc |
116 |
Q |
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| T |
46471535 |
atttacagcaacctataacataaaataaggttaatgcggaaatatgtattctgagtgcatatccctatcacatttatgtttcttgatgatggccaatttc |
46471436 |
T |
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| Q |
117 |
ggcatcataccaatactaaaactatagatattaatctaatagaatgacatttacaatatgagtttgtcccaattctaatcaggaaaccgagtataaccca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471435 |
ggcatcataccaatactaaaactatagatattaatctaatagaatgacatttacaatatgagtttgtcccaattctaatcaggaaaccgagtataaccca |
46471336 |
T |
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| Q |
217 |
aggttctaagcaggaaactccaaaaattacagt-gagtaatgagtatagctctaatatgtgaaccggtcatttttggatgaattgcatctctg |
308 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46471335 |
aggttctaagcaggaaactccaaaaattacagtagagtaatgagtatagctctaatctgtgaaccggtcatttttggatgaattgcatctctg |
46471243 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 1474954 - 1474869
Alignment:
| Q |
222 |
ctaagcaggaaactccaaaaattacagtgagtaatgagtatagctctaatatgtgaaccggtcatttttggatgaattgcatctctg |
308 |
Q |
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|||||||||||||| ||||||||| || || ||||||| |||||||||| ||||| | ||||||||||||||||||||| |||| |
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| T |
1474954 |
ctaagcaggaaactacaaaaatta-agcaagcaatgagtgtagctctaatctgtgactcaatcatttttggatgaattgcatgtctg |
1474869 |
T |
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