View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12494_high_4 (Length: 420)

Name: NF12494_high_4
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12494_high_4
NF12494_high_4
[»] chr3 (24 HSPs)
chr3 (9-404)||(20016186-20016579)
chr3 (9-386)||(19955831-19956217)
chr3 (17-384)||(20036596-20036966)
chr3 (17-386)||(19848743-19849115)
chr3 (53-403)||(20045862-20046212)
chr3 (51-404)||(19812018-19812371)
chr3 (9-386)||(19838140-19838526)
chr3 (9-378)||(26646774-26647134)
chr3 (9-151)||(24839959-24840101)
chr3 (54-386)||(19950880-19951212)
chr3 (231-384)||(19853270-19853423)
chr3 (179-384)||(19989280-19989485)
chr3 (14-144)||(19858070-19858200)
chr3 (13-122)||(19853532-19853641)
chr3 (54-386)||(19818313-19818645)
chr3 (50-152)||(19943710-19943810)
chr3 (18-125)||(30914660-30914764)
chr3 (65-142)||(19989522-19989599)
chr3 (55-120)||(26653174-26653239)
chr3 (244-397)||(19857815-19857969)
chr3 (264-358)||(20005225-20005319)
chr3 (276-358)||(19943503-19943585)
chr3 (276-358)||(24840226-24840308)
chr3 (11-76)||(19971677-19971742)
[»] chr1 (1 HSPs)
chr1 (53-386)||(1716970-1717303)
[»] chr8 (4 HSPs)
chr8 (49-384)||(22652113-22652448)
chr8 (9-122)||(22685668-22685778)
chr8 (53-124)||(22689684-22689755)
chr8 (53-122)||(11564163-11564232)
[»] chr5 (5 HSPs)
chr5 (243-404)||(9814775-9814936)
chr5 (245-397)||(26355148-26355300)
chr5 (186-358)||(38435286-38435465)
chr5 (9-121)||(9815058-9815167)
chr5 (9-124)||(26354912-26355027)
[»] chr4 (2 HSPs)
chr4 (53-325)||(6397767-6398039)
chr4 (63-225)||(6398178-6398340)
[»] chr7 (8 HSPs)
chr7 (107-212)||(12581117-12581222)
chr7 (58-110)||(12581424-12581476)
chr7 (55-110)||(12497241-12497296)
chr7 (55-110)||(12521106-12521161)
chr7 (106-212)||(12496933-12497039)
chr7 (106-212)||(12520798-12520904)
chr7 (53-110)||(12519821-12519878)
chr7 (53-110)||(12580110-12580167)


Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 20016186 - 20016579
Alignment:
Q  9 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016186 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 20016285  T
Q  109 tttcactacctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016286 tttcactacctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgtt 20016385  T
Q  209 ttctacctctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgta 308  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016386 ttctac--ctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccaatgacagggtaaccacccaaaaccataatatcctccaaagtgattgta 20016483  T
Q  309 gcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016484 gcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttg 20016579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 19956217 - 19955831
Alignment:
Q  9 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 108  Q
    ||||||| | |||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  19956217 agatgaacaacaataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaa 19956118  T
Q  109 tttcactacctttatcagcgaacatatccatccacattgatg---tgtacgcgtga---cgttgtttccgat---tagtaagttgctgtcttgcaaggat 199  Q
    |||||||||||||||||  ||| ||||||||||| | |||||   |  |||  | |   | |||||||  ||   |||||||||||| |  || ||| ||    
T  19956117 tttcactacctttatcaatgaaaatatccatccatagtgatgttctagacgaattacctccttgtttcacatcagtagtaagttgctttaatgtaagtat 19956018  T
Q  200 caatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaa 299  Q
    |||||||||||| ||||||||||||| |  |||||  | |  | ||||||||| ||| || |||||||||||||| ||||||||||| | ||| ||||||    
T  19956017 caatttgttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaa 19955918  T
Q  300 gtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagcaagttttgattt 386  Q
    |||||||| || ||| ||||||||||||||||||||||||||| | |||||||||||||  ||||  || |||||||||||| ||||    
T  19955917 gtgattgttgcctcaccaaatggaaacacaaatgtatttgtctcacaacaccatttctcaacaactccaaatagcaagtttttattt 19955831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 20036596 - 20036966
Alignment:
Q  17 agcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcacta 116  Q
    |||||| ||||||||| ||||||||||  || ||| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  20036596 agcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcacta 20036695  T
Q  117 cctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgt---tgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttcta 213  Q
    |||||||||  ||| |||||||||||   |||||||   ||   || |   ||||||  |||||||||||| |||||||||| ||| |  || | ||| |    
T  20036696 cctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgcaatgatgagcttttcttcaa 20036795  T
Q  214 cctctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttc 313  Q
     |||| |||||| |  ||| | ||||||  ||||||||||||| || |  ||||| ||||| || | |||||| |||||||||||| ||| ||| |||||    
T  20036796 tctctttcatttcttggtcatgaagtgaagtgaaaacaggatcaccaagaacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttc 20036895  T
Q  314 agcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagcaagttttgat 384  Q
    | |||| | ||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  20036896 accaaaggaaaacacaaatgtatttgtcttggaacaccatttctccacaaccccatatagcaagttttgat 20036966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 19849115 - 19848743
Alignment:
Q  17 agcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcacta 116  Q
    |||||| ||||||||| ||||||||||  || ||| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  19849115 agcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcacta 19849016  T
Q  117 cctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgt---tgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttcta 213  Q
    |||||||||  ||| |||||||||||   |||||||   ||   || |   ||||||  |||||||||||| |||||||||| ||| |  || | ||| |    
T  19849015 cctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgcaatgatgagcttttcttcaa 19848916  T
Q  214 cctctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttc 313  Q
     |||| |||||| |  ||| | ||||||  ||||||||||||| || |  ||||| ||||| || | |||||| |||||||||||||||||||| |||||    
T  19848915 tctctttcatttcttggtcatgaagtgaagtgaaaacaggatcaccaagaacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttc 19848816  T
Q  314 agcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagcaagttttgattt 386  Q
    | |||| | ||||||||| |||||||| |||| ||||||||||||  | ||| ||  ||||||||||||||||    
T  19848815 accaaaggaaaacacaaaggtatttgtattaggacaccatttctcaactaccccaactagcaagttttgattt 19848743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 53 - 403
Target Start/End: Complemental strand, 20046212 - 20045862
Alignment:
Q  53 tttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgatgtg 152  Q
    ||||||||| |||||||||||||||| |||||||| ||| || ||||| |||||||||||||||||||||||   ||||||||||||||| | |||||||    
T  20046212 tttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatccataatgatgtg 20046113  T
Q  153 tacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaacag 252  Q
    || || ||||  |  |||| ||| ||||| ||||  ||| || |||||||||| ||||| ||||||||||||| |  ||||| || |  | ||||||||     
T  20046112 taagcatgaccatcgttcctatttgtaagctgcttcctttcatggatcaatttattttccacctctctcatttcttggtctttaactttggtgaaaacat 20046013  T
Q  253 gatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacacca 352  Q
    ||||||| |||| ||||||||| |||||||| || ||||||||||| || ||||| |  ||| |||| ||||| | |||||||||||| | | |||||||    
T  20046012 gatcgccaatgatagggtaacctcccaaaacaatgatatcctccaaggttattgttgtctcaccaaagggaaaaataaatgtatttgtatcacaacacca 20045913  T
Q  353 tttctccgcaacctcatatagcaagttttgatttctcagtatgcgacactt 403  Q
    ||||||| ||||| | | ||| ||||| |||||| | || |||| ||||||    
T  20045912 tttctccacaaccccttgtagtaagttctgatttttaagaatgcaacactt 20045862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 51 - 404
Target Start/End: Complemental strand, 19812371 - 19812018
Alignment:
Q  51 tatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgatg 150  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||  |||||  ||||||    
T  19812371 tatttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaatattgatccattttgatg 19812272  T
Q  151 tgtacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaac 250  Q
    ||   || | || || ||| |  |    | ||| | ||||||||||||| |  || ||||| ||||||||||||| |  ||||| || |  | | ||||     
T  19812271 tggtagccttaccttttttactctgccaaggtttccgtcttgcaaggatgagcttcttttccacctctctcatttcttggtcttgaactttggtaaaaat 19812172  T
Q  251 aggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacac 350  Q
    |||||| || |||| ||||||||| ||||||||||||||||||||||||||||| || |||||| |||||||||| ||||| || || |||| | |||||    
T  19812171 aggatcaccaatgatagggtaaccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacac 19812072  T
Q  351 catttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttg 404  Q
    ||||||||  ||||| || | ||||| ||| ||||| | |||||| ||||||||    
T  19812071 catttctcaacaaccccaaagagcaattttagatttttgagtatgtgacacttg 19812018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 19838526 - 19838140
Alignment:
Q  9 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 108  Q
    ||||||| | |||| ||||||||| | ||||||||| |||||| || || ||| |||||||||||||||| ||||||||| ||||| |||||||||||||    
T  19838526 agatgaacaacaattggaaacaaaaagcttttcacgcaagagtgttgattaggaaaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaa 19838427  T
Q  109 tttcactacctttatcagcgaacatatccatccacattgatgtgt---acgcgtgacgt---tgtttccgat---tagtaagttgctgtcttgcaaggat 199  Q
    |||| |||||||||||   ||| ||||||||||| | ||||||     |||  | || |   ||||||  ||   |||||||||||| |  || ||||||    
T  19838426 tttcgctacctttatcgatgaaaatatccatccatagtgatgttctagacgaattacctccttgtttcacatcagtagtaagttgctttaatgtaaggat 19838327  T
Q  200 caatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaa 299  Q
    |||||||||||| ||||||||||||| |  |||||  | |  | ||||||||| ||| || |||||||||||||| ||||||||||| | ||| ||||||    
T  19838326 caatttgttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaa 19838227  T
Q  300 gtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagcaagttttgattt 386  Q
    |||||||| || ||| |||||||||||||||||||||| |||| | | |||||||||||  |||| ||| ||| |||||||| ||||    
T  19838226 gtgattgttgcctcaccaaatggaaacacaaatgtattggtctcacagcaccatttctcaacaacttcaaataacaagtttttattt 19838140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 26647134 - 26646774
Alignment:
Q  9 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 108  Q
    ||||||| |||||| ||||||||||||||||||||  ||   | |  |||||| |||||| ||| ||||| |||||||| ||| ||||||||||||||||    
T  26647134 agatgaacagcaataggaaacaaacaacttttcaccaaa---tttagatgaggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaa 26647038  T
Q  109 tttcactacctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgtt 208  Q
    ||||||||||||||||   |||  |||| ||||| | || |||    || | ||  ||||| | |      ||||||| |||||||||||| | ||| ||    
T  26647037 tttcactacctttatccatgaaactatcgatccataatggtgttctagccttaccgtgtttacaa------agttgctctcttgcaaggatgagtttctt 26646944  T
Q  209 ttctacctctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgta 308  Q
    ||| ||||||||||||| |  |||||||||||| |||||||||||||| || || | ||| ||||| ||||||||||| |||||||||||||| || ||     
T  26646943 ttccacctctctcatttcttggtcttcaagtgaaatgaaaacaggatccccaataataggataaccccccaaaaccatgatatcctccaaagtaatagtt 26646844  T
Q  309 gcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagcaagt 378  Q
    |||||| |||| | || |||||| |||||||||| | |||||||||||||  | ||| ||||||||||||    
T  26646843 gcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaactaccccatatagcaagt 26646774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 24839959 - 24840101
Alignment:
Q  9 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 108  Q
    ||||||| |||||  ||||||||| ||| ||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  24839959 agatgaacagcaacaggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaa 24840058  T
Q  109 tttcactacctttatcagcgaacatatccatccacattgatgt 151  Q
     |||||||||||||||   ||| ||||||||||||| ||||||    
T  24840059 cttcactacctttatcgatgaaaatatccatccacactgatgt 24840101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 386
Target Start/End: Complemental strand, 19951212 - 19950880
Alignment:
Q  54 ttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgatg-tg 152  Q
    |||| ||| |||||||||| ||||| ||||||| |||| || ||||||||||||||||||||||||||||||| ||| ||||||||||| | || || |     
T  19951212 ttattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatccataatgttgctc 19951113  T
Q  153 tacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaacag 252  Q
    ||  | | || |  |||    |||| ||||  ||||||||||| ||| |  || | ||| |||||| |||||| |   |||| |||||  ||||||||||    
T  19951112 tagccat-acctgttttagtcttagaaagtgtctgtcttgcaatgatgagcttttcttcaacctctttcatttcttgatcttgaagtgtaatgaaaacag 19951014  T
Q  253 gatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacacca 352  Q
    |||| || |  ||||||||||| ||||||||||||| ||||||||||||||| || || ||| |||||||||||||||||||||| |||| || ||||||    
T  19951013 gatcaccaagaacagggtaaccccccaaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgtattggtctcagtacacca 19950914  T
Q  353 tttctccgcaacctcatatagcaagttttgattt 386  Q
    ||||||  ||||| || | |||||||| ||||||    
T  19950913 tttctcaacaaccccaaaaagcaagttatgattt 19950880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 231 - 384
Target Start/End: Complemental strand, 19853423 - 19853270
Alignment:
Q  231 tcttcaagtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaa 330  Q
    |||||||||||  |||||| |||||| || |||| ||||||||| ||||||||||||| |||||||||||| ||||| |||||| ||||||| |||||||    
T  19853423 tcttcaagtgatttgaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaa 19853324  T
Q  331 atgtatttgtcttagaacaccatttctccgcaacctcatatagcaagttttgat 384  Q
    ||||||| |||| |||||||||||| ||  ||||| || ||| |||||||||||    
T  19853323 atgtattggtctcagaacaccatttgtcaacaaccccacataacaagttttgat 19853270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 179 - 384
Target Start/End: Complemental strand, 19989485 - 19989280
Alignment:
Q  179 aagttgctgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccgatgacagggtaaccaccc 278  Q
    ||||||||||||| ||||||||||||  ||||| |||||| |||||| |  ||||| |||||  |||||||||||||| || |  | ||||||||| ||     
T  19989485 aagttgctgtctttcaaggatcaattccttttccacctctttcatttcttggtcttgaagtgtaatgaaaacaggatcaccaagaatagggtaaccccct 19989386  T
Q  279 aaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagcaagt 378  Q
    |||||||||| ||| ||||||||||| || || ||| |||||||||| |||||||| ||||||| | |||||||||||||  ||||| || |||||||||    
T  19989385 aaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaatagcaagt 19989286  T
Q  379 tttgat 384  Q
    | ||||    
T  19989285 tatgat 19989280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 19858200 - 19858070
Alignment:
Q  14 aatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttca 113  Q
    ||||||||| ||||||||| | ||||||||   | ||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  19858200 aatagcaataggaaacaaagatcttttcacattaaagtatctattaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttca 19858101  T
Q  114 ctacctttatcagcgaacatatccatccaca 144  Q
    |||||||||||   ||| |||||||||||||    
T  19858100 ctacctttatcgatgaaaatatccatccaca 19858070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 19853641 - 19853532
Alignment:
Q  13 gaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttc 112  Q
    |||||||||| ||||||||| | ||||||||   | ||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  19853641 gaatagcaataggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttc 19853542  T
Q  113 actaccttta 122  Q
    ||||||||||    
T  19853541 actaccttta 19853532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 386
Target Start/End: Complemental strand, 19818645 - 19818313
Alignment:
Q  54 ttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgatgtgt 153  Q
    |||||||| |||||||||||||| | ||||||||||||||| |||||||||||||||||  |||||||| ||   || || ||||||||  ||||||||     
T  19818645 ttatgaggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatttcggtacctttaccaataaaaatttccatccattttgatgtgg 19818546  T
Q  154 acgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaacagg 253  Q
      || | |  ||| ||    |    | ||| ||||||||||| ||| |  || ||||| ||||||||||||| |   |||| || |  ||||||||||||    
T  19818545 tagccttagcttgattagtctgccaaggtttctgtcttgcaatgatgagcttcttttcaacctctctcatttcttgatctttaactttgatgaaaacagg 19818446  T
Q  254 atcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccat 353  Q
    ||| || |||| ||| ||||| |||||||| || | ||||||||||||||| || || ||| |||||||||| ||||| || || |||| | ||||||||    
T  19818445 atcaccaatgataggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacaccat 19818346  T
Q  354 ttctccgcaacctcatatagcaagttttgattt 386  Q
    |||||  ||||| || |||||||||||||||||    
T  19818345 ttctcaacaaccccaaatagcaagttttgattt 19818313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 19943810 - 19943710
Alignment:
Q  50 gtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgat 149  Q
    |||| ||||||| ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||| ||||    
T  19943810 gtatctatgaggaaaaacaaa--ttgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatccacactgat 19943713  T
Q  150 gtg 152  Q
    |||    
T  19943712 gtg 19943710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 30914764 - 30914660
Alignment:
Q  18 gcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactac 117  Q
    ||||| ||||||||| ||||||||||  ||   | ||| |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||     
T  30914764 gcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaa 30914668  T
Q  118 ctttatca 125  Q
    ||||||||    
T  30914667 ctttatca 30914660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 19989599 - 19989522
Alignment:
Q  65 aacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatcca 142  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||  ||| | |||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca 19989522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 26653239 - 26653174
Alignment:
Q  55 tatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctt 120  Q
    ||||||| |||||||||||||||| |||||  ||||| ||||| ||||||||||||||||||||||    
T  26653239 tatgaggaaaaacaaaaattgacaaccaagctgcaaggaatgcatcatgttcaatttcactacctt 26653174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 19857969 - 19857815
Alignment:
Q  244 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatt-tgtct 342  Q
    ||||||||||||| || | || || |||||| |||||||||| || |||||| | ||| ||||| |||||| |||| |||||||| ||||||||  ||||    
T  19857969 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 19857870  T
Q  343 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcg 397  Q
     |||||||||||| ||  ||||| |||| | ||||||| ||| | ||| ||||||    
T  19857869 cagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcg 19857815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 358
Target Start/End: Original strand, 20005225 - 20005319
Alignment:
Q  264 acagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 358  Q
    ||||| ||||| |||||||| || | ||| |||||||||||||| |||||| ||||| |||||||||| || ||||| | | |||||||||||||    
T  20005225 acaggataaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctc 20005319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 19943585 - 19943503
Alignment:
Q  276 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 358  Q
    |||||||| || | ||| |||||||||||||| |||||| ||||| |||||||||| || ||||| | | |||||||||||||    
T  19943585 cccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctc 19943503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 24840226 - 24840308
Alignment:
Q  276 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 358  Q
    |||||||| || | |||||||||||||||||| |||||| ||||| ||||||| || || ||||| | | |||||||||||||    
T  24840226 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 24840308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19971742 - 19971677
Alignment:
Q  11 atgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattga 76  Q
    |||||||||||| ||||||||| ||||||||||   | ||||| ||||||  ||||||||||||||    
T  19971742 atgaatagcaataggaaacaaagaacttttcactataaagtatctatgagaaaaaacaaaaattga 19971677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 53 - 386
Target Start/End: Complemental strand, 1717303 - 1716970
Alignment:
Q  53 tttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgatgtg 152  Q
    ||||||||| |||||| |||  |||| |||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||| | || |||     
T  1717303 tttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaacaaaaacatccatccataatgttgtt 1717204  T
Q  153 -tacgcgtgacg--ttgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaa 249  Q
     || || |  |   |||||||| || |   ||||| | |||||||||||||||||| | ||| | |||| |||||| |  ||||||||| || | |||||    
T  1717203 ctaggcctacctccttgtttcctataa---agttgttctcttgcaaggatcaatttatcttcaatctctttcatttcttggtcttcaagcgaaacgaaaa 1717107  T
Q  250 caggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaaca 349  Q
    ||||||| || |||||||||||| | || ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| | ||||    
T  1717106 caggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatttgtctcacaaca 1717007  T
Q  350 ccatttctccgcaacctcatatagcaagttttgattt 386  Q
    |||||| ||  ||| | |||||| |||||||||||||    
T  1717006 ccatttttcaacaatcccatataacaagttttgattt 1716970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 49 - 384
Target Start/End: Original strand, 22652113 - 22652448
Alignment:
Q  49 agtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattga 148  Q
    ||||| ||||||  |||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||   ||| ||||||||||| | ||     
T  22652113 agtatctatgagcaaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatccataatgt 22652212  T
Q  149 tg-tgtacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaa 247  Q
    || | || || |||| |||||||  | ||| || |   ||||||||||||||||  || ||||| ||||||||||| |||   |||||||||||||||||    
T  22652213 tgctcta-gcctgactttgtttcttagtagaaattgtttgtcttgcaaggatcatcttcttttccacctctctcatcttttcatcttcaagtgagatgaa 22652311  T
Q  248 aacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaa 347  Q
    ||||||||| || |  |||||||||||  | |||| ||||| ||| || || ||||| || || ||| ||||||||||||||||||  ||||||| | |     
T  22652312 aacaggatcaccaagaacagggtaaccctctaaaatcataacatcttctaaggtgatagttgcctcaccaaatggaaacacaaatgagtttgtctcacag 22652411  T
Q  348 caccatttctccgcaacctcatatagcaagttttgat 384  Q
    |||||||||||  ||||| || |||||||||| ||||    
T  22652412 caccatttctcaacaaccccaaatagcaagttatgat 22652448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 22685668 - 22685778
Alignment:
Q  9 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 108  Q
    |||||||||||||||||||||| | || |||||||  ||     ||||||||| |||||||||| ||||| ||||| |||||||||||||||||| ||||    
T  22685668 agatgaatagcaatcggaaacatagaagttttcaccaaaat---tttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatgcttcatgctcaa 22685764  T
Q  109 tttcactaccttta 122  Q
    ||||||||||||||    
T  22685765 tttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 22689684 - 22689755
Alignment:
Q  53 tttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatc 124  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||    
T  22689684 tttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatc 22689755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 11564163 - 11564232
Alignment:
Q  53 tttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactaccttta 122  Q
    ||||||||| ||||||||||| || ||||| | || ||  ||||||||||||||||||| |||| |||||    
T  11564163 tttatgaggaaaaacaaaaatggaaagccatgcagaaatgaatgcttcatgttcaattttactagcttta 11564232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 243 - 404
Target Start/End: Complemental strand, 9814936 - 9814775
Alignment:
Q  243 atgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtct 342  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||| |||||||||| | || || || ||| |||| ||||||||||||||||| ||||    
T  9814936 atgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtct 9814837  T
Q  343 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttg 404  Q
    || |||||||||||||  ||||| |||||||||||||||||| | ||| |||||| ||||||    
T  9814836 tacaacaccatttctcaacaaccccatatagcaagttttgatctttcattatgcggcacttg 9814775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 397
Target Start/End: Original strand, 26355148 - 26355300
Alignment:
Q  245 gaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctta 344  Q
    ||||| |||||| || |||||||||||||| || | |||||||| ||||||||||   |  || || ||| |||| ||||||||||||||||| |||| |    
T  26355148 gaaaataggatcaccaatgacagggtaacccccaagaaccataacatcctccaaacctaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 26355247  T
Q  345 gaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcg 397  Q
     |||||||||||||| ||||| | || ||||||||||||||| ||||||||||    
T  26355248 caacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatgcg 26355300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 358
Target Start/End: Original strand, 38435286 - 38435465
Alignment:
Q  186 tgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaacaggatcgcc--------gatgacagggtaaccacc 277  Q
    ||||||||||| |||||||| ||||| ||||||||||||| |  |||||||| || | |||||||||||||  |        ||| |  || ||||| ||    
T  38435286 tgtcttgcaagtatcaatttcttttccacctctctcatttcttggtcttcaactgtggtgaaaacaggatcatcaagtataggataagtggataacc-cc 38435384  T
Q  278 caaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 358  Q
    ||||||||| ||||| || ||||||||||| ||| || ||| |||||||||||||||||| |||||| |||||||||||||    
T  38435385 caaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctc 38435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 9815167 - 9815058
Alignment:
Q  9 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 108  Q
    |||||||||||||| | ||||||| ||||||||||  ||||   ||||||||  |||||||| ||||||| ||| |||||||  || |||||||| ||||    
T  9815167 agatgaatagcaatagaaaacaaagaacttttcaccaaaga---tttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaa 9815071  T
Q  109 tttcactaccttt 121  Q
    |||||||||||||    
T  9815070 tttcactaccttt 9815058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 26354912 - 26355027
Alignment:
Q  9 agatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaa 108  Q
    |||||||||||||| ||||||||| ||||||||||  |   | ||||   ||| |||||||||||||| | ||||| | |||  ||||||||||||||||    
T  26354912 agatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttcatgttcaa 26355011  T
Q  109 tttcactacctttatc 124  Q
     |||||||||||||||    
T  26355012 cttcactacctttatc 26355027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 53 - 325
Target Start/End: Original strand, 6397767 - 6398039
Alignment:
Q  53 tttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgatgtg 152  Q
    |||| |||| ||| || ||||||||| ||| |||||||| || |||||||||||||||||||||||||||||   ||||||||||||||| | |||| ||    
T  6397767 tttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatccataatgatatg 6397866  T
Q  153 tacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttctacctctctcatttttgtgtcttcaagtgagatgaaaacag 252  Q
    || || |||| ||  |||| ||| |||||||||| |||| | ||||||||||| ||||| |||| || ||||| |  ||||| || |  | |||||||||    
T  6397867 taagcatgaccttcattcctatttgtaagttgctttctttctaggatcaatttattttccacctatcacatttcttggtctttaacttgggtgaaaacag 6397966  T
Q  253 gatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaa 325  Q
    |||| ||  ||| ||||||  | ||||| || || |||||||||||||| ||||| || ||| |||| |||||    
T  6397967 gatccccagtgatagggtagacccccaagacaatgatatcctccaaagttattgttgcctcaccaaagggaaa 6398039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 6398340 - 6398178
Alignment:
Q  63 aaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgatgtgtacgcgtgac 162  Q
    |||||||||||| ||| |||| ||||||| || ||||||||||||||||||||||||||||     |||||||||||||| |   ||||||| | | |||    
T  6398340 aaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctttatagataaacatatccatccataactatgtgtaagtgggac 6398241  T
Q  163 gttgtttccgattagtaagttgctgtcttgcaaggatcaatttgttttctacctctctcattt 225  Q
     ||  |||  ||| ||||||| || |||| | ||||||||||||||||| |||||||||||||    
T  6398240 ctttattcgtattggtaagtttctttctttctaggatcaatttgttttccacctctctcattt 6398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 12581117 - 12581222
Alignment:
Q  107 aatttcactacctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaatttg 206  Q
    ||||||| ||||||||||   ||||||||||||||| | |||||||||   ||||| ||  |||| ||| |||||||||| |||| ||||||||||||||    
T  12581117 aatttcattacctttatcgttgaacatatccatccataatgatgtgtaattgtgaccttcattcctatttgtaagttgctttctttcaaggatcaatttg 12581216  T
Q  207 ttttct 212  Q
     |||||    
T  12581217 ctttct 12581222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 12581476 - 12581424
Alignment:
Q  58 gagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatt 110  Q
    |||| |||||||||||||||| |||||||||||| || |||||||||||||||    
T  12581476 gaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaatt 12581424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 12497296 - 12497241
Alignment:
Q  55 tatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatt 110  Q
    ||||||| |||||||||||||||| ||| |||||||| || |||||||||||||||    
T  12497296 tatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt 12497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 12521161 - 12521106
Alignment:
Q  55 tatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatt 110  Q
    ||||||| |||||||||||||||| ||| |||||||| || |||||||||||||||    
T  12521161 tatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt 12521106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 12496933 - 12497039
Alignment:
Q  106 caatttcactacctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaattt 205  Q
    |||||||| ||||||||||   ||||||||||||||| | |||||||||   ||||| ||  |||| ||| |||||||||| ||||  |||||||| |||    
T  12496933 caatttcattacctttatcgttgaacatatccatccataatgatgtgtaattgtgaccttcattcctatttgtaagttgctttctttgaaggatcagttt 12497032  T
Q  206 gttttct 212  Q
    | |||||    
T  12497033 gctttct 12497039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 12520798 - 12520904
Alignment:
Q  106 caatttcactacctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgttgtttccgattagtaagttgctgtcttgcaaggatcaattt 205  Q
    |||||||| ||||||||||   ||||||||||||||| | |||||||||   ||||| ||  |||| ||| |||||||||| ||||  |||||||| |||    
T  12520798 caatttcattacctttatcgttgaacatatccatccataatgatgtgtaattgtgaccttcattcctatttgtaagttgctttctttgaaggatcagttt 12520897  T
Q  206 gttttct 212  Q
    | |||||    
T  12520898 gctttct 12520904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 12519821 - 12519878
Alignment:
Q  53 tttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatt 110  Q
    ||||||||| |||||||||||||||| ||||||   ||| || |||||||||||||||    
T  12519821 tttatgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt 12519878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 12580110 - 12580167
Alignment:
Q  53 tttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatt 110  Q
    ||||||||| |||||||||||||||| |||||||  ||| || || ||||||||||||    
T  12580110 tttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaatt 12580167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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