View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12494_low_1 (Length: 589)

Name: NF12494_low_1
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12494_low_1
NF12494_low_1
[»] chr5 (4 HSPs)
chr5 (326-531)||(42965180-42965386)
chr5 (147-322)||(42965460-42965635)
chr5 (76-141)||(42965678-42965743)
chr5 (16-67)||(2893653-2893704)
[»] chr7 (2 HSPs)
chr7 (16-67)||(34458783-34458834)
chr7 (16-67)||(41800919-41800970)
[»] chr6 (3 HSPs)
chr6 (16-67)||(6004432-6004483)
chr6 (16-67)||(6007962-6008013)
chr6 (18-67)||(24378241-24378290)
[»] chr4 (1 HSPs)
chr4 (16-67)||(26693392-26693442)
[»] chr3 (2 HSPs)
chr3 (16-67)||(36708349-36708400)
chr3 (16-67)||(42676063-42676114)
[»] chr1 (3 HSPs)
chr1 (16-67)||(43510415-43510466)
chr1 (16-67)||(43669954-43670005)
chr1 (18-67)||(34854267-34854316)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-67)||(72330-72379)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 326 - 531
Target Start/End: Complemental strand, 42965386 - 42965180
Alignment:
Q  326 attttaccttgacgtggaataagaatcgagaatatgatgattattaaaaataa-tgatcgtaatataaatatgatttgttgttatcggatgacaatgaag 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||    
T  42965386 attttaccttgacgtggaataagaatcgagaatatgatgattattaaaaaaaaatgatcgtaatataaatatgatttgttgttaccggatgacaatgaag 42965287  T
Q  425 aatatcagtaacaatggatatgacatatgttaatccttatcgagtcaaatcaattagttaaactaatacaatttatattagtctctaaaattataggata 524  Q
    |||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42965286 aatatcagtaccactgaatatgacatatgttaatccttatcgagtcaaatcaattagttaaactaatacaatttatattagtctctaaaattataggata 42965187  T
Q  525 gtgacaa 531  Q
    |||||||    
T  42965186 gtgacaa 42965180  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 147 - 322
Target Start/End: Complemental strand, 42965635 - 42965460
Alignment:
Q  147 agttcaaaatacatgaaactataagtattagtacaattattcaaagttcacttgcaccgcaagtaagcgagttgaatttaataaatggaatcaagttgtt 246  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||    
T  42965635 agttcaaaatacataaaactataagtattagtacaattattcaaagttcacttgcactgcaagtaaacgagttgaatttaataagtagaatcaagttgtt 42965536  T
Q  247 cgcgaactttaaatgtgctggactcgagctttaaataaggtttatatcgaactagaatctaatcgagtctaatcga 322  Q
    || ||||||||||||   |||| |||||||||||||||||||| |||||||||||| || |||  |||||||||||    
T  42965535 cgtgaactttaaatgcattggattcgagctttaaataaggtttctatcgaactagagtcgaattaagtctaatcga 42965460  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 42965743 - 42965678
Alignment:
Q  76 ttgaaacaagttgaatatttgtttttccttctcgattattatgtgcttgaggtggaaaagaaaaaa 141  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42965743 ttgaaaaaagttgaatatttgtttttccttctagattattatgtgcttgaggtggaaaagaaaaaa 42965678  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 2893704 - 2893653
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    ||||||||||||||| |||| |||||||| | ||||||||||||||||||||    
T  2893704 tgtgcttgggaactgctgtttggtgtgttatttaattccattttgatttctt 2893653  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 34458783 - 34458834
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    ||||||||||||||| |||| |||||||| | ||||||||||||||||||||    
T  34458783 tgtgcttgggaactgctgtttggtgtgttatttaattccattttgatttctt 34458834  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 41800970 - 41800919
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    |||||||||| |||| |||| |||||||| | ||||||||||||||||||||    
T  41800970 tgtgcttggggactgctgtttggtgtgttatttaattccattttgatttctt 41800919  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 6004483 - 6004432
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    |||||||| |||||  |||| |||||||| ||||||||||||||||||||||    
T  6004483 tgtgcttgagaactactgtttggtgtgttatataattccattttgatttctt 6004432  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 6008013 - 6007962
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    |||||||| |||||  |||| |||||||| ||||||||||||||||||||||    
T  6008013 tgtgcttgagaactaatgtttggtgtgttatataattccattttgatttctt 6007962  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 24378290 - 24378241
Alignment:
Q  18 tgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    |||||||| |||| |||| |||||||| | ||||||||||||||||||||    
T  24378290 tgcttggggactgctgtttggtgtgttatttaattccattttgatttctt 24378241  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 26693442 - 26693392
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    ||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  26693442 tgtgcttgggaactgctggttggtgtgtttt-taattccattttgatttctt 26693392  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 36708400 - 36708349
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    ||||||||||||||| || | |||||||| ||||||| ||||||||||||||    
T  36708400 tgtgcttgggaactgctgcttggtgtgttatataatttcattttgatttctt 36708349  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 42676063 - 42676114
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    |||||||||| |||| |||| |||||||| | ||||||||||||||||||||    
T  42676063 tgtgcttggggactgctgtttggtgtgttatttaattccattttgatttctt 42676114  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 43510415 - 43510466
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    ||||||||||||||| || | |||||||| ||||||| ||||||||||||||    
T  43510415 tgtgcttgggaactgctgcttggtgtgttatataatttcattttgatttctt 43510466  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 43670005 - 43669954
Alignment:
Q  16 tgtgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    ||||||| ||||||| |||| |||||||| |||||||| |||||||||||||    
T  43670005 tgtgcttaggaactgctgtttggtgtgttatataattctattttgatttctt 43669954  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 34854267 - 34854316
Alignment:
Q  18 tgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    ||||||||||||| | || |||||||| ||||||| ||||||||||||||    
T  34854267 tgcttgggaactgctctttggtgtgttatataatttcattttgatttctt 34854316  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 72330 - 72379
Alignment:
Q  18 tgcttgggaactgttgttgggtgtgttttataattccattttgatttctt 67  Q
    |||||| |||||| |||| |||||||| ||||||| ||||||||||||||    
T  72330 tgcttgagaactgctgtttggtgtgttatataatttcattttgatttctt 72379  T

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