View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12494_low_11 (Length: 249)
Name: NF12494_low_11
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12494_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26333677 - 26333441
Alignment:
| Q |
1 |
cctctttttggatatgttcttgcagcaaaggatatttcaggaagtaccactaatggcactttaaagccaccagttgattacacattagtatcaaacaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26333677 |
cctctttttggatatgttcttgcagcaaaggatatttcaggaagtaccactaatggcactttaaagccaccagttgattacacattagtatcaaacaccg |
26333578 |
T |
|
| Q |
101 |
catccgtcatgtttgatcaagactccccgttgtatatttggttaccgatagcacctgatggctaccatgctgtaggccatgttgtcaccacaacacaaga |
200 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26333577 |
catccgtcatggttgatcaagactcccctttgtatatttggttaccgatagcacctgatggctaccatgctgtaggccatgttgtcaccacaacacaaga |
26333478 |
T |
|
| Q |
201 |
caaaccttcccccgacaaagtcatgtgtgtcagagca |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26333477 |
caaaccttcccccgacaaagtcatgtgtgtcagagca |
26333441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26338995 - 26338765
Alignment:
| Q |
1 |
cctctttttggatatgttcttgcagcaaaggatatttcaggaagtaccactaatggcactttaaagccaccagttgattacacattagtatcaaacaccg |
100 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| || |||||| ||||| | |
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| T |
26338995 |
cctctttttggttatgttcttgtagcaaaggatatttcagga---aagactaatggcactttaaagccacctgttgattactcactagtattgaacactg |
26338899 |
T |
|
| Q |
101 |
catccgtcatgtttgatcaagactccccgttgtatatttggttaccgatagcacctgatggctaccatgctgtaggccatgttgtcaccacaacacaaga |
200 |
Q |
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| T |
26338898 |
catccatcacggttactcaagactcttctttgtatatctggctaccaatagcacctaatggctaccatgctgtaggccatgttgtcaccaaaacacaaga |
26338799 |
T |
|
| Q |
201 |
caaaccttcccccgacaaagtcatgtgtgtcaga |
234 |
Q |
| |
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||||||||| || |||||||||||||||||||| |
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| T |
26338798 |
taaaccttccaccaacaaagtcatgtgtgtcaga |
26338765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26348910 - 26348677
Alignment:
| Q |
1 |
cctctttttggatatgttcttgcagcaaaggatatttcaggaagtaccactaatggcactttaaagccaccagttgattacacattagtatcaaacaccg |
100 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| |||| ||||||||| | | |||||||| |||||||||||||||||| | ||||| ||||||| |
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| T |
26348910 |
cctctttttggatatgtttttgtagcaaaggatgtttcttcaagtaccacaggtagaactttaaaaccaccagttgattacacacttgtatcgaacaccg |
26348811 |
T |
|
| Q |
101 |
catccgtcatgtttgatcaagactccccgttgtatatttggttaccgatagcacctgatggctaccatgctgtaggccatgttgtcaccacaacacaaga |
200 |
Q |
| |
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||||| ||| | | |||||| ||| | | |||||||||||||| ||||||||| |||| ||| | ||| |||| ||||||||||||||||||||||| |
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| T |
26348810 |
catccttcaaggctactcaagattccactctttatatttggttaccaatagcacctaatggatacaaagctttaggacatgttgtcaccacaacacaaga |
26348711 |
T |
|
| Q |
201 |
caaaccttcccccgacaaagtcatgtgtgtcaga |
234 |
Q |
| |
|
|||||||| | |||||| |||||||||||||| |
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|
| T |
26348710 |
taaaccttcacttgacaaaatcatgtgtgtcaga |
26348677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 26355518 - 26355751
Alignment:
| Q |
1 |
cctctttttggatatgttcttgcagcaaaggatatttcaggaagtaccactaatggcactttaaagccaccagttgattacacattagtatcaaacaccg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||||||| |||| ||||||| ||| | |||| ||||| |
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| T |
26355518 |
cctctttttggatatgttcttgtggcaaaggatgtttcttcaagtactactaatagcactttaaagaaaccaattgattatacacttgtattgaacacat |
26355617 |
T |
|
| Q |
101 |
catccgtcatgtttgatcaagactccccgttgtatatttggttaccgatagcacctgatggctaccatgctgtaggccatgttgtcaccacaacacaaga |
200 |
Q |
| |
|
|| | | | | || ||||||| || | | |||||||||||||| |||||||||||||| ||| | ||| ||||||||||||||||| |||||||||| |
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| T |
26355618 |
caactattaaggttaatcaagataccacatgttatatttggttaccaatagcacctgatggttacaaagctttaggccatgttgtcaccgcaacacaaga |
26355717 |
T |
|
| Q |
201 |
caaaccttcccccgacaaagtcatgtgtgtcaga |
234 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| |
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| T |
26355718 |
taaaccttcccttgacaaaatcatgtgtgtcaga |
26355751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 26325643 - 26325546
Alignment:
| Q |
133 |
tatatttggttaccgatagcacctgatggctaccatgctgtaggccatgttgtcaccacaacacaagacaaaccttcccccgacaaagtcatgtgtgt |
230 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | | ||| ||||||||||| || || | ||||| || ||||| | |||||| |||||||||| |
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| T |
26325643 |
tatatttggttaccaatagcacctgatggctacaaagttgttggccatgttgttactacttcccaagagaagccttcactagacaaaatcatgtgtgt |
26325546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 54948704 - 54948804
Alignment:
| Q |
130 |
ttgtatatttggttaccgatagcacctgatggctaccatgctgtaggccatgttgtcaccacaacacaagacaaaccttcccccgacaaagtcatgtgtg |
229 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||| |||| |||||||||||||||||| ||||| |||||||||| ||| |||||| ||||||||| |
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| T |
54948704 |
ttgtatatttggctaccagtagcacctaatggctaccgtgctttaggccatgttgtcaccaaaacacgagacaaacctccccttgacaaaatcatgtgtg |
54948803 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
54948804 |
t |
54948804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 54948575 - 54948665
Alignment:
| Q |
1 |
cctctttttggatatgttcttgcagcaaaggatatttcaggaagtaccactaatggcactttaaagccaccagttgattacacattagtat |
91 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||| |||| ||| ||||| || |||| |||||||||||| ||||||||||||| |||| |
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| T |
54948575 |
cctctttttgggtatgttcttgtagcaaaagatgtttcttcaagcaccacaaaaagcacattaaagccaccaattgattacacatttgtat |
54948665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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