View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12494_low_12 (Length: 242)
Name: NF12494_low_12
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12494_low_12 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 24278221 - 24277996
Alignment:
| Q |
5 |
caccaaacagataattgctagggagaatcagcaaaattggtcacaactgttacagaaagtgtctttataattgatgtcctacttttcaaaaaagaaacaa |
104 |
Q |
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| T |
24278221 |
caccaaacagataattgctagggagaatcagcaaaattggtcacaactgttacagaaagtgtctttataattgatgtcctacttttcaaaaaagaaacaa |
24278122 |
T |
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| Q |
105 |
tgaatggtatcaaacatgtgcaccacaccgaagatggataagagaagactacatggttcaaacatggaagaatattttattgaaagaaatatcttgaatg |
204 |
Q |
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| T |
24278121 |
tggatggtatcaaacatgtgcaccacaccgaagatggataagagaagactacatggttcaaacatggaagaatattttattgaaataaatatcttgaatg |
24278022 |
T |
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| Q |
205 |
aat----gaatagtaatgtagccaca |
226 |
Q |
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| T |
24278021 |
aatgaatgaatagtaatgtagccaca |
24277996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 325676 - 325537
Alignment:
| Q |
78 |
atgtcctacttttcaaaaaagaaacaatgaatggtatcaaacatgtgcaccacaccgaagatggataagagaagactacatggttcaaacatggaagaat |
177 |
Q |
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| T |
325676 |
atgtcctacttttcaaaaaagaaacaatggatggtatcaaacatgtgcaccacaccgaagatggataaaagaagactacatgattcaaacatggaagaat |
325577 |
T |
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| Q |
178 |
attttattgaaagaaatatcttgaatgaatgaatagtaat |
217 |
Q |
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| T |
325576 |
attttattaaaataaatatcttgaatgaatgaatagtaat |
325537 |
T |
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