View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12494_low_13 (Length: 240)
Name: NF12494_low_13
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12494_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26333704 - 26333926
Alignment:
| Q |
1 |
ctaacatagaatatccgtaccttagtcctgttggttcgtacaccgaggcgccttgatcatccggtccactttcgtaggcgccccaaactttgctgaatgt |
100 |
Q |
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| T |
26333704 |
ctaacatagaatatccgtacctcagtcctgttggttcgtacaccgaggcgccttgatcatccggtccactttcgtaggcgccccaaactttgctgaatgt |
26333803 |
T |
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| Q |
101 |
tgatgcttgcatcacatgcagctcacctagatcaatgactgtgtttgcgaaactggtacctgtattttgcaattcaacacttgctacagttagcctgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26333804 |
tgatgcttgcatcacatgcagctcacctagatcaatgactgtgtttgcgaaactggtacctgtattttgcaattcaacacttgctacagttagcctgcat |
26333903 |
T |
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| Q |
201 |
ttactatcatgtattacaagagg |
223 |
Q |
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||||||||||||| ||||||||| |
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| T |
26333904 |
ttactatcatgtactacaagagg |
26333926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26339022 - 26339242
Alignment:
| Q |
1 |
ctaacatagaatatccgtaccttagtcctgttggttcgtacaccgaggcgccttgatcatccggtccactttcgtaggcgccccaaactttgctgaatgt |
100 |
Q |
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|||||||||| ||||| ||||| | |||||||||||| ||||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| |
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| T |
26339022 |
ctaacatagagtatccatacctcaatcctgttggttcatacactgaggcgccttgattgtccggtccaccttcgtaggtgccccaaactttgctgaatgt |
26339121 |
T |
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| Q |
101 |
tgatgcttgcatcacatgcagctcacctagatcaatgactgtgtttgcgaaactggtacctgtattttgcaattcaacacttgctacagttagcctgcat |
200 |
Q |
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| T |
26339122 |
tgatgcttgcatcacatgcagctcaccaagatcgatgattgtatttgcgaaactggtacctgtattttgcaattcaacacttgctacagttag-ctgcat |
26339220 |
T |
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| Q |
201 |
ttactatcatgtattacaagag |
222 |
Q |
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| T |
26339221 |
tcactatattgtattgcaagag |
26339242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 26348962 - 26349045
Alignment:
| Q |
26 |
tcctgttggttcgtacaccgaggcgccttgatcatccggtccactttcgtaggcgccccaaactttgctgaatgttgatgcttg |
109 |
Q |
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|||||||||||| ||||| ||||||||||||| ||| | |||| ||||| || ||||||||||||||||| ||||||||||| |
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| T |
26348962 |
tcctgttggttcatacacggaggcgccttgattgtccaggccaccctcgtacgcaccccaaactttgctgaaagttgatgcttg |
26349045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 54948523 - 54948442
Alignment:
| Q |
26 |
tcctgttggttcgtacaccgaggcgccttgatcatccggtccactttcgtaggcgccccaaactttgctgaatgttgatgct |
107 |
Q |
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||||||||||||| |||| ||||| |||| |||||||||||||| || ||||||||||| |||| | || ||||||||| |
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| T |
54948523 |
tcctgttggttcgaacactgaggctcctttatcatccggtccaccatcaatggcgccccaaattttgttaaacgttgatgct |
54948442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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