View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12494_low_14 (Length: 214)
Name: NF12494_low_14
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12494_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 13885820 - 13885607
Alignment:
| Q |
1 |
cctaaaatcaagcatagcattaaataaatccctaaaaaatctcacactgtcaagtcaaatttcttcaacacaatgacattttcccgcttcctctcttcct |
100 |
Q |
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| T |
13885820 |
cctaaaataaagcatagcattaaagaaatccctaaaaaatctcacactgtcaagtcaaatttcttcaacacaatggcattttcccgcttcctctcttcct |
13885721 |
T |
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| Q |
101 |
ccttcaaggccgccgtgcctacattcattcgccgccgccccatcgtcactgccactgtgtcttactttggcatctcctacgccgctcgtccactgattcg |
200 |
Q |
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| T |
13885720 |
ccttcaaggccgccgtgcctacattcattcgccgccgccccatcgtcactgccactgtgtcttactttggcatctcctacgccgctcgtccactgattcg |
13885621 |
T |
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| Q |
201 |
ttacttcaacacca |
214 |
Q |
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|||||||||||||| |
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| T |
13885620 |
ttacttcaacacca |
13885607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 13875658 - 13875605
Alignment:
| Q |
47 |
ctgtcaagtcaaatttcttcaacacaatgacattttcccgcttcctctcttcct |
100 |
Q |
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|||| ||||||| |||||||||||||||| ||||||||||| |||||||||||| |
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| T |
13875658 |
ctgtgaagtcaagtttcttcaacacaatggcattttcccgcctcctctcttcct |
13875605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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