View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12494_low_5 (Length: 418)
Name: NF12494_low_5
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12494_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 35690985 - 35690602
Alignment:
| Q |
18 |
aattaagtgaaaaagaaaaggtatcgtgtatgaagatatatatgtacgttatttgtcaagattgagagatgatttgcgtataaaggaactcgttccaaat |
117 |
Q |
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| T |
35690985 |
aattaagtgaaaaagaaaaggtatcgtgtatgaagatatatatgtacgttatttgtcaagattgagagatgatttgcgtataaaggaactcgttccaaat |
35690886 |
T |
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| Q |
118 |
gtctggtaagcctggtaaacaccaatgaatacaatctgcataagtagttggatcagcttgttgttcaggtgttagcatcttcccttgacgtatggtataa |
217 |
Q |
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| T |
35690885 |
gtctggtaagcctggtaaacaccaatgaatacaatctgcataagtagttggatcagcttgttgttcaggtgttagcatcttcccttgacgtatggtataa |
35690786 |
T |
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| Q |
218 |
acagaggtatgtgcatcttttcgatactctgataaggttgtgatgttaaggaaatacactggcaccttcattgattttgttacattgttggcaatgacga |
317 |
Q |
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| T |
35690785 |
acagaggtatgcgcatcttttcgatactctgataaggttgtgatgttaaggaaatacactggcaccttcattgattttgttacattgttggcaatgacga |
35690686 |
T |
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| Q |
318 |
aaaggcgacgatctgtgcccacattcaaaggggtcgacatgttgagaactggagttgtttctttagcacattttataccatctg |
401 |
Q |
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| T |
35690685 |
aaaggcgacgatctgtgcccacattcaaaggggtcgacatgttgagaactggagttgtttctttagcacattttataccatctg |
35690602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 95 - 398
Target Start/End: Complemental strand, 31823411 - 31823108
Alignment:
| Q |
95 |
gtataaaggaactcgttccaaatgtctggtaagcctggtaaacaccaatgaatacaatctgcataagtagttggatcagcttgttgttcaggtgttagca |
194 |
Q |
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| T |
31823411 |
gtataaagcaactcattccatgtatcaggtaaccctggtaaacaccaatggatacaatctgcataagtagcagggttagcttgttgctctggagttaaca |
31823312 |
T |
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| Q |
195 |
tcttcccttgacgtatggtataaacagaggtatgtgcatcttttcgatactctgataaggttgtgatgttaaggaaatacactggcaccttcattgattt |
294 |
Q |
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|| ||||||||||| || |||||||| |||||||||||||||| ||| |||||||| | ||||||| | |||| |||| ||| || ||||||| |
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| T |
31823311 |
ctttgccttgacgtattgtgtaaacagaagtatgtgcatcttttctatattctgataatttggtgatgtatataaaatccactttcacttttgttgattt |
31823212 |
T |
|
| Q |
295 |
tgttacattgttggcaatgacgaaaaggcgacgatctgtgcccacattcaaaggggtcgacatgttgagaactggagttgtttctttagcacattttata |
394 |
Q |
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| T |
31823211 |
tgtcacatttttagcaatgacaaaaagacgatgatctgtgcctacttgtactggagtagacatgttgagaattggtgtagtttcctttgcacattttatt |
31823112 |
T |
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| Q |
395 |
ccat |
398 |
Q |
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|||| |
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| T |
31823111 |
ccat |
31823108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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