View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12494_low_7 (Length: 323)

Name: NF12494_low_7
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12494_low_7
NF12494_low_7
[»] chr6 (33 HSPs)
chr6 (17-317)||(27592688-27592988)
chr6 (17-317)||(27679165-27679465)
chr6 (17-317)||(27706071-27706370)
chr6 (19-317)||(27677286-27677582)
chr6 (23-317)||(26802661-26802952)
chr6 (15-316)||(27604371-27604672)
chr6 (160-316)||(27698305-27698461)
chr6 (188-317)||(27718218-27718347)
chr6 (188-317)||(27610841-27610970)
chr6 (204-316)||(27427461-27427573)
chr6 (167-317)||(26861832-26861979)
chr6 (165-317)||(26884384-26884533)
chr6 (198-317)||(28786497-28786616)
chr6 (198-317)||(28792618-28792737)
chr6 (145-304)||(25538772-25538931)
chr6 (198-317)||(28781358-28781477)
chr6 (132-317)||(27530983-27531165)
chr6 (143-304)||(25579951-25580112)
chr6 (145-304)||(26143097-26143256)
chr6 (15-64)||(27698251-27698300)
chr6 (172-230)||(26056232-26056290)
chr6 (172-230)||(26076202-26076260)
chr6 (174-243)||(26646772-26646838)
chr6 (174-243)||(26752740-26752806)
chr6 (279-317)||(27724775-27724813)
chr6 (15-104)||(28786668-28786755)
chr6 (15-104)||(28792789-28792876)
chr6 (145-230)||(25482048-25482133)
chr6 (23-62)||(27427287-27427326)
chr6 (143-205)||(25511271-25511333)
chr6 (187-304)||(27214652-27214769)
chr6 (187-304)||(27234459-27234576)
chr6 (15-119)||(28781516-28781618)
[»] scaffold0349 (2 HSPs)
scaffold0349 (188-317)||(14195-14324)
scaffold0349 (188-317)||(3259-3389)
[»] scaffold0003 (2 HSPs)
scaffold0003 (204-316)||(59790-59902)
scaffold0003 (23-62)||(60037-60076)
[»] chr4 (8 HSPs)
chr4 (204-316)||(18073982-18074094)
chr4 (27-276)||(18655150-18655391)
chr4 (27-276)||(18731177-18731418)
chr4 (27-91)||(18723758-18723819)
chr4 (198-276)||(18723921-18723999)
chr4 (27-276)||(18699073-18699314)
chr4 (23-62)||(18074229-18074268)
chr4 (198-275)||(18679403-18679480)
[»] scaffold0277 (3 HSPs)
scaffold0277 (207-317)||(4529-4639)
scaffold0277 (207-317)||(13490-13600)
scaffold0277 (15-119)||(13340-13442)
[»] scaffold0419 (2 HSPs)
scaffold0419 (207-317)||(7744-7854)
scaffold0419 (15-119)||(7902-8004)
[»] chr1 (4 HSPs)
chr1 (172-276)||(28127492-28127593)
chr1 (23-64)||(268025-268066)
chr1 (207-276)||(268202-268271)
chr1 (199-276)||(28164200-28164277)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 27592688 - 27592988
Alignment:
Q  17 agaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27592688 agaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaag 27592787  T
Q  117 atgagatcattgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccg 216  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27592788 atgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccg 27592887  T
Q  217 gacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagcctatgctt 316  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27592888 gacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctt 27592987  T
Q  317 c 317  Q
    |    
T  27592988 c 27592988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 27679465 - 27679165
Alignment:
Q  17 agaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27679465 agaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaag 27679366  T
Q  117 atgagatcattgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccg 216  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27679365 atgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccg 27679266  T
Q  217 gacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagcctatgctt 316  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27679265 gacaagttagcagcctggctcagagcctttttccatccttgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctt 27679166  T
Q  317 c 317  Q
    |    
T  27679165 c 27679165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 27706071 - 27706370
Alignment:
Q  17 agaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaag 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  27706071 agaatgtattattcatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttccctttaaac-tttaag 27706169  T
Q  117 atgagatcattgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccg 216  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27706170 atgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccg 27706269  T
Q  217 gacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagcctatgctt 316  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27706270 gacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctt 27706369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 27677286 - 27677582
Alignment:
Q  19 aatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  27677286 aatgtattatacatttctaactatttcgacatataaataactaatagtactt--ttaaaactgtatataaaaaaggtatttcccttttaacctttaagat 27677383  T
Q  119 gagatcattgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccgga 218  Q
    ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27677384 gagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccgga 27677483  T
Q  219 caagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagcctatgcttc 317  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  27677484 caagttagcagcctggctcagagcctctttccatccctgcaacctctccatgcttttcggatcattttgaaacctcttttcatgctcagccaatgcttc 27677582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 26802952 - 26802661
Alignment:
Q  23 tattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgaga 122  Q
    ||||||||||||||||||||||| ||||||||||||||||||   |||||||||||  |||||||| ||||||||||||| |||||||||||||||||||    
T  26802952 tattatacatttctaactatttcaacatataaataactaata---cttgtttaaaaacgtatataagaaaggtatttcccatttaacctttaagatgaga 26802856  T
Q  123 tcattgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaag 222  Q
    | ||||  ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26802855 ttattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaag 26802756  T
Q  223 ttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagcctatgcttc 317  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| | |  ||||||||||||||| ||||||||||||||| |||||||    
T  26802755 ttagcagcctggctcagagccactttccatcgctccaacctctccatgttatccttatcattttgaaaccttttttcatgctcagccaatgcttc 26802661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 27604371 - 27604672
Alignment:
Q  15 tcagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtattt---cccttttaacct 111  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||   |||||||||||  ||| |||||||||||||||   | | ||||||||    
T  27604371 tcagaatatattatacatttctaactattttgacatataaataactaata---cttgtttaaaaacgtaaataaaaaaggtatttgatctcatttaacct 27604467  T
Q  112 ttaagatgagatcattgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggt 211  Q
    | || ||||||| ||||   ||||||| ||||| ||| |||||| || |||||||||||||||||| |||  |||| |||||||||||||||||||||||    
T  27604468 tgaatatgagattattgggtaattgaaattgaataaagaaaatacaaaagggaaaaataggatttatgtagtgttgagtacccaggaggactatcatggt 27604567  T
Q  212 agccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccta 311  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||  ||||| | |  ||||||||||||||| |||| |||||||||| |    
T  27604568 agccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaacctttttttatgctcagccaa 27604667  T
Q  312 tgctt 316  Q
    |||||    
T  27604668 tgctt 27604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 160 - 316
Target Start/End: Original strand, 27698305 - 27698461
Alignment:
Q  160 agggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgca 259  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27698305 agggaaatataggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgca 27698404  T
Q  260 acctctccatgtttttcggatcattttgaaacctcttttcatgctcagcctatgctt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27698405 acctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctt 27698461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 27718218 - 27718347
Alignment:
Q  188 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||  |||||||||    
T  27718218 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttg 27718317  T
Q  288 aaacctcttttcatgctcagcctatgcttc 317  Q
    |||||||||||||||||||||| |||||||    
T  27718318 aaacctcttttcatgctcagccaatgcttc 27718347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 27610841 - 27610970
Alignment:
Q  188 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttg 287  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |||  |||||||||    
T  27610841 ggtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttg 27610940  T
Q  288 aaacctcttttcatgctcagcctatgcttc 317  Q
    |||||||||||||||||||||| |||||||    
T  27610941 aaacctcttttcatgctcagccaatgcttc 27610970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 27427461 - 27427573
Alignment:
Q  204 atcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgc 303  Q
    ||||||||||| || ||||||||||||| | ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  27427461 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 27427560  T
Q  304 tcagcctatgctt 316  Q
    |||||| ||||||    
T  27427561 tcagccaatgctt 27427573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 317
Target Start/End: Complemental strand, 26861979 - 26861832
Alignment:
Q  167 aataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctc 266  Q
    ||||||||||| || |||| ||||||||||||   |||  ||||||||| |||||||||||||| ||| |||||||  ||||||||| ||||||||||||    
T  26861979 aataggatttatgttaagtggggtacccagga---ctaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctc 26861883  T
Q  267 catgtttttcggatcattttgaaacctcttttcatgctcagcctatgcttc 317  Q
    |||||| | |  ||||||||||||||| |||||||||| |||| |||||||    
T  26861882 catgttatccatatcattttgaaaccttttttcatgcttagccaatgcttc 26861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 317
Target Start/End: Complemental strand, 26884533 - 26884384
Alignment:
Q  165 aaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctc 264  Q
    |||||| |||||||||||||| || |||||| ||   |||  |||||||||||||||||||||| | || |||| ||||  |||||||||||||||||||    
T  26884533 aaaatatgatttaagtaaagtgggatacccaaga---ctaaaatggtagccggacaagttagcaacttgcctcatagccattttccatcgctgcaacctc 26884437  T
Q  265 tccatgtttttcggatcattttgaaacctcttttcatgctcagcctatgcttc 317  Q
    |||||||| | |  ||||||||||||||| |||||||| |||||| |||||||    
T  26884436 tccatgttatccttatcattttgaaaccttttttcatggtcagccaatgcttc 26884384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 317
Target Start/End: Complemental strand, 28786616 - 28786497
Alignment:
Q  198 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttt 297  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||||   |||||| | ||||||||||||||||| | |  |||||||||||||||||||    
T  28786616 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28786517  T
Q  298 tcatgctcagcctatgcttc 317  Q
    |||||| ||||| |||||||    
T  28786516 tcatgcccagccaatgcttc 28786497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 317
Target Start/End: Complemental strand, 28792737 - 28792618
Alignment:
Q  198 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttt 297  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||||   |||||| | ||||||||||||||||| | |  |||||||||||||||||||    
T  28792737 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28792638  T
Q  298 tcatgctcagcctatgcttc 317  Q
    |||||| ||||| |||||||    
T  28792637 tcatgcccagccaatgcttc 28792618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 25538931 - 25538772
Alignment:
Q  145 gaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcct 244  Q
    ||||||||||| |  | ||||||| | |||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | |||||      
T  25538931 gaaataaaatatagaaaggaaaaacaagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagcta 25538832  T
Q  245 ctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgct 304  Q
      |||||| |  |||| | |||||||||||||  || |||||||||||||| ||||||||    
T  25538831 tcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttcatgct 25538772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 317
Target Start/End: Complemental strand, 28781477 - 28781358
Alignment:
Q  198 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttt 297  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||||   |||||| | ||||||||||||||||| | |  |||||||||||||||||||    
T  28781477 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28781378  T
Q  298 tcatgctcagcctatgcttc 317  Q
    |||||  ||||| |||||||    
T  28781377 tcatgtccagccaatgcttc 28781358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 132 - 317
Target Start/End: Original strand, 27530983 - 27531165
Alignment:
Q  132 aattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcc 231  Q
    ||||||| || |||||| |||||| || |||||||||||||||||||||||||| || |||||| |     ||| ||| | ||| ||||||||||| ||     
T  27530983 aattgaaattaaagaaagaaaatataaaagggaaaaataggatttaagtaaagtgggctacccatgtt---tataatgctggccagacaagttagccgct 27531079  T
Q  232 tggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagcctatgcttc 317  Q
    ||||||||||| ||||||||| |||||||||||||  |||| | |  ||||||||||||| | |||| |||| ||||  |||||||    
T  27531080 tggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgcttc 27531165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 304
Target Start/End: Complemental strand, 25580112 - 25579951
Alignment:
Q  143 aagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagc 242  Q
    ||||||||||||| |  | ||||||| | | |||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | |||||    
T  25580112 aagaaataaaatatagaaaggaaaaagaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagc 25580013  T
Q  243 ctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgct 304  Q
        |||||| |  |||| | |||||||||||||   | |||||||||||||| ||||||||    
T  25580012 tatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgct 25579951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 26143256 - 26143097
Alignment:
Q  145 gaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcct 244  Q
    ||||||||||| |  | ||||||| | | |||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | |||||      
T  26143256 gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagcta 26143157  T
Q  245 ctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgct 304  Q
      |||||| |  |||| | |||||||||||||   | |||||||||||||| ||||||||    
T  26143156 tcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgct 26143097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 27698251 - 27698300
Alignment:
Q  15 tcagaatgtattatacatttctaactatttcgacatataaataactaata 64  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  27698251 tcagaatatattataaatttctaactatttcgacatataaataactaata 27698300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 26056290 - 26056232
Alignment:
Q  172 gatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc 230  Q
    |||||||||||||| |||||| || ||||||||| ||| ||||||||||||||||||||    
T  26056290 gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc 26056232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 26076260 - 26076202
Alignment:
Q  172 gatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc 230  Q
    |||||||||||||| |||||| || ||||||||| ||| ||||||||||||||||||||    
T  26076260 gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc 26076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 26646838 - 26646772
Alignment:
Q  174 tttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcc 243  Q
    |||||||||||| ||||||||||||   |||| |||||| ||||||||||||||||| ||| ||||||||    
T  26646838 tttaagtaaagtggggtacccagga---ctataatggtatccggacaagttagcagcttgggtcagagcc 26646772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 26752806 - 26752740
Alignment:
Q  174 tttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcc 243  Q
    |||||||||||| ||||||||||||   |||| |||||| ||||||||||||||||| ||| ||||||||    
T  26752806 tttaagtaaagtggggtacccagga---ctataatggtatccggacaagttagcagcttgggtcagagcc 26752740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 27724775 - 27724813
Alignment:
Q  279 atcattttgaaacctcttttcatgctcagcctatgcttc 317  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  27724775 atcattttgaaacctcttttcatgctcagccaatgcttc 27724813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 28786755 - 28786668
Alignment:
Q  15 tcagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttccctt 104  Q
    ||||||| || ||||||||||||||||||| |||||| |||||| ||  | |||||||||||||  ||| ||| ||||||| ||||||||    
T  28786755 tcagaatatagtatacatttctaactattttgacataaaaataatta--aatacttgtttaaaaacgtaaatagaaaaggtgtttccctt 28786668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 28792876 - 28792789
Alignment:
Q  15 tcagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttccctt 104  Q
    ||||||| || ||||||||||||||||||| |||||| |||||| ||  | |||||||||||||  ||| ||| ||||||| ||||||||    
T  28792876 tcagaatatagtatacatttctaactattttgacataaaaataatta--aatacttgtttaaaaacgtaaatagaaaaggtgtttccctt 28792789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 25482133 - 25482048
Alignment:
Q  145 gaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc 230  Q
    ||||||||||| |  | ||||||| | | |||||||||||| |||||| || ||||||||| ||| ||||||||||| ||||||||    
T  25482133 gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagc 25482048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 27427287 - 27427326
Alignment:
Q  23 tattatacatttctaactatttcgacatataaataactaa 62  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  27427287 tattatacatttttaactattttgacatataaataactaa 27427326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 25511333 - 25511271
Alignment:
Q  143 aagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactat 205  Q
    ||||||||||||| || |  |||||| | |||||||||||||| ||||||||| |||||||||    
T  25511333 aagaaataaaatataaaaaagaaaaacaagatttaagtaaagtagggtacccatgaggactat 25511271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 27214769 - 27214652
Alignment:
Q  187 gggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcatttt 286  Q
    |||||| ||| |||||||| ||| ||||| || ||||||||||| ||| | |||||    ||||||  |||||||| ||||||||||| |   | |||||    
T  27214769 gggtactcagaaggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttatttt 27214670  T
Q  287 gaaacctcttttcatgct 304  Q
    ||||||||| ||||||||    
T  27214669 gaaacctctcttcatgct 27214652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 27234459 - 27234576
Alignment:
Q  187 gggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcatttt 286  Q
    |||||| ||| |||||||| ||| ||||| || ||||||||||| ||| | |||||    ||||||  |||||||| ||||||||||| |   | |||||    
T  27234459 gggtactcagaaggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttatttt 27234558  T
Q  287 gaaacctcttttcatgct 304  Q
    ||||||||| ||||||||    
T  27234559 gaaacctctcttcatgct 27234576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 28781618 - 28781516
Alignment:
Q  15 tcagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaaccttta 114  Q
    ||||||| || ||||||||||||||||||| |||||| |||||| ||  | || ||||||||||  ||| ||| |||| || |||||| ||||  |||||    
T  28781618 tcagaatatagtatacatttctaactattttgacataaaaataatta--aataattgtttaaaaacgtaaatagaaaaagtgtttcccatttaggcttta 28781521  T
Q  115 agatg 119  Q
    |||||    
T  28781520 agatg 28781516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 14195 - 14324
Alignment:
Q  188 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14195 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttg 14294  T
Q  288 aaacctcttttcatgctcagcctatgcttc 317  Q
    |||||||||||||||||||||| |||||||    
T  14295 aaacctcttttcatgctcagccaatgcttc 14324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 3259 - 3389
Alignment:
Q  188 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatg-tttttcggatcatttt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  3259 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcatttt 3358  T
Q  287 gaaacctcttttcatgctcagcctatgcttc 317  Q
    ||||||||||||||||||||||| |||||||    
T  3359 gaaacctcttttcatgctcagccaatgcttc 3389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 59902 - 59790
Alignment:
Q  204 atcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgc 303  Q
    ||||||||||| || ||||||||||||| | ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  59902 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 59803  T
Q  304 tcagcctatgctt 316  Q
    |||||| ||||||    
T  59802 tcagccaatgctt 59790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 60076 - 60037
Alignment:
Q  23 tattatacatttctaactatttcgacatataaataactaa 62  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  60076 tattatacatttttaactattttgacatataaataactaa 60037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 18074094 - 18073982
Alignment:
Q  204 atcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgc 303  Q
    ||||||||||| || ||||||||||||| | ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  18074094 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 18073995  T
Q  304 tcagcctatgctt 316  Q
    |||||| ||||||    
T  18073994 tcagccaatgctt 18073982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 18655150 - 18655391
Alignment:
Q  27 atacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagatcat 126  Q
    |||||||||||||||||| ||| |||||||||||||   ||||||||||||| |||| || |||||||| ||||   ||||  ||||||||||  |||||    
T  18655150 atacatttctaactattttgacttataaataactaa---tacttgtttaaaaatgtaaat-aaaaaggtgtttcgaatttaggctttaagatggtatcat 18655245  T
Q  127 tgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttag 226  Q
    ||   |||  || || || |||||||||  || | || |||| | || |||||| |||  | ||||||   |||||||  ||||||||||||||||||||    
T  18655246 tgaggaataaaaattaaataaataaaatgcaaaaagg-aaaacatgaattaagtgaagaggagtaccc---aggactagaatggtagccggacaagttag 18655341  T
Q  227 cagcctggctcagagcctctttccatcgctgcaacctctccatgtttttc 276  Q
    |||| | | ||||||||   |||||| | ||||||| |||||||||||||    
T  18655342 cagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttc 18655391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 18731177 - 18731418
Alignment:
Q  27 atacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagatcat 126  Q
    |||||||||||||||||| ||| |||||||||||||   ||||||||||||| |||| | ||||||||| |||||  ||||  ||||||||||  || ||    
T  18731177 atacatttctaactattttgacttataaataactaa---tacttgtttaaaaatgta-aaaaaaaaggtgtttccaatttaggctttaagatggtattat 18731272  T
Q  127 tgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttag 226  Q
    ||   |||  || || || |||||||||  || | || |||| | || ||||||||||  | ||||||   | |||||  ||||||||||||||||||||    
T  18731273 tgaggaataaaaattaaataaataaaatgcaaaatgg-aaaacaagaattaagtaaagaggagtaccc---atgactaaaatggtagccggacaagttag 18731368  T
Q  227 cagcctggctcagagcctctttccatcgctgcaacctctccatgtttttc 276  Q
    |||| | | ||||||||   |||||| | ||||||| |||||||||||||    
T  18731369 cagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttc 18731418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 18723758 - 18723819
Alignment:
Q  27 atacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaa 91  Q
    |||||||||||||||||| ||| |||||||||||||   ||||||||||||| |||| |||||||    
T  18723758 atacatttctaactattttgacttataaataactaa---tacttgtttaaaaatgtaaataaaaa 18723819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 18723921 - 18723999
Alignment:
Q  198 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttc 276  Q
    |||||||  |||||||||||||||||||||||| | | ||||||||   |||||| | ||||||| |||||||||||||    
T  18723921 aggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttc 18723999  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 18699073 - 18699314
Alignment:
Q  27 atacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagatcat 126  Q
    |||||||||||||||||| ||| |||||||||||||   |||||||||||||  ||| || |||||||| |||||  ||||  ||||||||||  |||||    
T  18699073 atacatttctaactattttgacttataaataactaa---tacttgtttaaaaacgta-attaaaaaggtgtttccaatttaggctttaagatggtatcat 18699168  T
Q  127 tgtaaaattgaagttgaagaaataaaatagaagagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttag 226  Q
    ||   |||  || || || |||||||||  || | || |||| | || ||||||||||  | ||||||   || ||||  ||||||||||||||||||||    
T  18699169 tgaggaataaaaattaaataaataaaatgcaaaaagg-aaaacaagaattaagtaaagaggagtaccc---agaactaaaatggtagccggacaagttag 18699264  T
Q  227 cagcctggctcagagcctctttccatcgctgcaacctctccatgtttttc 276  Q
    |||| | | |||||||    |||||| | ||||||| |||||||||||||    
T  18699265 cagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttc 18699314  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 18074268 - 18074229
Alignment:
Q  23 tattatacatttctaactatttcgacatataaataactaa 62  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  18074268 tattatacatttttaactattttgacatataaataactaa 18074229  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 18679403 - 18679480
Alignment:
Q  198 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgttttt 275  Q
    |||||||  |||||||||||||||||||||||| | | |||||||    |||||| | ||||||| ||||||||||||    
T  18679403 aggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgttttt 18679480  T

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Target: scaffold0277 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 4529 - 4639
Alignment:
Q  207 atggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca 306  Q
    |||||||||||||||||||||||| ||| ||||||||   |||||| | ||||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  307 gcctatgcttc 317  Q
    ||| |||||||    
T  4629 gccaatgcttc 4639  T

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Target: scaffold0277; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 13490 - 13600
Alignment:
Q  207 atggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca 306  Q
    |||||||||||||||||||||||| ||| ||||||||   |||||| | ||||| | ||||||||| |||  ||||||||||||||||||||||||  ||    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 13589  T
Q  307 gcctatgcttc 317  Q
    ||| |||||||    
T  13590 gccaatgcttc 13600  T

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Target: scaffold0277; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 13340 - 13442
Alignment:
Q  15 tcagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaaccttta 114  Q
    ||||||| || ||||||||||||||||||| |||||| || ||| ||  | |||||||||||||  ||| ||| |||| || |||||| ||||  |||||    
T  13340 tcagaatatagtatacatttctaactattttgacataaaagtaatta--aatacttgtttaaaaacgtaaatagaaaaagtgtttcccatttaggcttta 13437  T
Q  115 agatg 119  Q
    |||||    
T  13438 agatg 13442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 317
Target Start/End: Complemental strand, 7854 - 7744
Alignment:
Q  207 atggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca 306  Q
    |||||||||||||||||||||||| ||| ||||||||   |||||| | ||||| | ||||||||| |||  ||||||||||||||||||||||||  ||    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 7755  T
Q  307 gcctatgcttc 317  Q
    ||| |||||||    
T  7754 gccaatgcttc 7744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 8004 - 7902
Alignment:
Q  15 tcagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaaccttta 114  Q
    ||||||| || ||||||||||||||||||| |||||| || ||| ||  | |||||||||||||  ||| ||| |||| || |||||| ||||  |||||    
T  8004 tcagaatatagtatacatttctaactattttgacataaaagtaatta--aatacttgtttaaaaacgtaaatagaaaaagtgtttcccatttaggcttta 7907  T
Q  115 agatg 119  Q
    |||||    
T  7906 agatg 7902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 28127492 - 28127593
Alignment:
Q  172 gatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgt 271  Q
    |||||||||| ||| |||||||| |||   |||| |||||||||||||||||||||||| ||| | |||||    |||||| | ||||| | ||||||||    
T  28127492 gatttaagtatagtagggtaccctgga---ctataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgt 28127588  T
Q  272 ttttc 276  Q
    |||||    
T  28127589 ttttc 28127593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 268025 - 268066
Alignment:
Q  23 tattatacatttctaactatttcgacatataaataactaata 64  Q
    |||||||| ||||||||||||||| |||||||| ||||||||    
T  268025 tattatacgtttctaactatttcgtcatataaacaactaata 268066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 268202 - 268271
Alignment:
Q  207 atggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttc 276  Q
    ||||||||| |||||||||| ||| ||| ||||||||   |||||| | ||||||| |||||||||||||    
T  268202 atggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatgtttttc 268271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 28164200 - 28164277
Alignment:
Q  199 ggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatcgctgcaacctctccatgtttttc 276  Q
    ||||||| |||||||||||||||||||||||| ||| | |||||    |||||| | ||||| | |||||||||||||    
T  28164200 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttc 28164277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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