View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12494_low_8 (Length: 310)
Name: NF12494_low_8
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12494_low_8 |
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| [»] chr8 (11 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 36209604 - 36209913
Alignment:
| Q |
1 |
caatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209604 |
caatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttcc |
36209703 |
T |
|
| Q |
101 |
ctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209704 |
ctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttga |
36209803 |
T |
|
| Q |
201 |
cagaatacaaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209804 |
cagaatacaaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttc |
36209903 |
T |
|
| Q |
301 |
agattttcat |
310 |
Q |
| |
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|||||||||| |
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| T |
36209904 |
agattttcat |
36209913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 36188160 - 36188472
Alignment:
| Q |
1 |
caatatgttatactatttagcaaacaatgacttgttaaca---gaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattct |
97 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
36188160 |
caatatgttatactatttagcaaaccatgacttgttaacaacagaacaaaccataccaaacctagttcaaaccattttattagagaggaaggtgaattcc |
36188259 |
T |
|
| Q |
98 |
tccctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatt |
197 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
36188260 |
cccctccctttaaagagccacagaggaaattactgcaagaaa-aagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatt |
36188358 |
T |
|
| Q |
198 |
tgacagaatacaaaatcttagttcatctataactgc-aaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcga |
296 |
Q |
| |
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||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36188359 |
tgacagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttgga |
36188458 |
T |
|
| Q |
297 |
cttcagattttcat |
310 |
Q |
| |
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||| ||||||||| |
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| T |
36188459 |
cttatgattttcat |
36188472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 36196481 - 36196790
Alignment:
| Q |
1 |
caatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttcc |
100 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||| |||| | ||| ||| |||||||| ||| |
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|
| T |
36196481 |
caatatgctatactatttagcaaa-agtgacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaattcctcc |
36196579 |
T |
|
| Q |
101 |
ctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttga |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
36196580 |
ctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttga |
36196679 |
T |
|
| Q |
201 |
cagaatacaaaatcttagttcatctataactgc-aaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgactt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36196680 |
cagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
36196779 |
T |
|
| Q |
300 |
cagattttcat |
310 |
Q |
| |
|
||||||||| |
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|
| T |
36196780 |
atgattttcat |
36196790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 36184220 - 36184376
Alignment:
| Q |
1 |
caatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||| | |
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|
| T |
36184220 |
caatatgttatactatttagcaaa-agtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaattccctc |
36184318 |
T |
|
| Q |
101 |
ctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccata |
158 |
Q |
| |
|
||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36184319 |
ctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
36184376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 36200404 - 36200545
Alignment:
| Q |
15 |
atttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttccctccctttaaagaa |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| || || | | ||||||| |||||||| || ||| |||| ||| |
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|
| T |
36200404 |
atttagcaaacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctctctctcttttctgaa |
36200503 |
T |
|
| Q |
115 |
ccacagaggaaattactgcaagaaacaagggaaatcttacca |
156 |
Q |
| |
|
||||| |||||| || ||||||||||||| |||||||||||| |
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|
| T |
36200504 |
ccacataggaaaataatgcaagaaacaagagaaatcttacca |
36200545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 36207688 - 36207817
Alignment:
| Q |
182 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaac |
280 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || ||| |||| ||| | | |||||||||||||||||||||||||||||| | | |
|
|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaatcacatgtgaacctctaatctctccaacatggtgttttcgatat |
36207787 |
T |
|
| Q |
281 |
gatgtgcatgtttcgacttcagattttcat |
310 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |
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|
| T |
36207788 |
gatgtgcatgtttggacttcaaattttcat |
36207817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 36184500 - 36184633
Alignment:
| Q |
182 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctataactgcaaagcacttctcaacctct----aatctctccaacatggtgttttcc |
276 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||||||||| |||| |
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|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttcc |
36184599 |
T |
|
| Q |
277 |
aaacgatgtgcatgtttcgacttcagattttcat |
310 |
Q |
| |
|
| ||| | ||||||| |||||||||||||||| |
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|
| T |
36184600 |
gtatgatattcatgtttggacttcagattttcat |
36184633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 36198878 - 36198960
Alignment:
| Q |
219 |
ttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttca |
301 |
Q |
| |
|
|||||||||| || ||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |
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|
| T |
36198878 |
ttcatctatacctaaaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagacttca |
36198960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 36214722 - 36214823
Alignment:
| Q |
208 |
caaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagatttt |
307 |
Q |
| |
|
|||| ||||| || ||||||| | |||||||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||| ||||||| ||||| |
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|
| T |
36214722 |
caaagtcttaattgatctataccaacaaagcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaatttt |
36214821 |
T |
|
| Q |
308 |
ca |
309 |
Q |
| |
|
|| |
|
|
| T |
36214822 |
ca |
36214823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 36200857 - 36200943
Alignment:
| Q |
207 |
acaaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgttt |
293 |
Q |
| |
|
|||||||||||||||||||| | | || ||||| | |||||| |||||| ||||||||||||| |||||| | ||||||||||||| |
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|
| T |
36200857 |
acaaaatcttagttcatctacaccaacacagcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgttt |
36200943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 36202310 - 36202346
Alignment:
| Q |
274 |
tccaaacgatgtgcatgtttcgacttcagattttcat |
310 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
36202310 |
tccaaactatgttcatgtttcgacttcagattttcat |
36202346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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