View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12494_low_9 (Length: 260)
Name: NF12494_low_9
Description: NF12494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12494_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 39166064 - 39166291
Alignment:
| Q |
18 |
gttagcatctacatccaaacaaacactagaagtagaaccattgttgttgacattatatgagagatgcatctttgaatcagatatcatttcccatgttgac |
117 |
Q |
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| T |
39166064 |
gttagcatctacatccaaacaaacactagaagtagaaccattgttgttgacattatatgagagatgcatctttgaatcagatatcatttcccatgttgac |
39166163 |
T |
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| Q |
118 |
tccggacctgaacatgttgttccaagtttcacttgtttcccttctccttctccttgtaaacaaaattttgtacctttaagcaagagtatattttgggatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
39166164 |
tccggacctgaacatgttgttccaagtttcacttgtttcccttctccttctccttgtaaacaaaattttgtacctttaagtaagagtatattttggggtg |
39166263 |
T |
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| Q |
218 |
tgtattcccagccatcagaattagaaca |
245 |
Q |
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| T |
39166264 |
tgtattcccagccatcagaattagaaca |
39166291 |
T |
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