View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12495_high_2 (Length: 489)
Name: NF12495_high_2
Description: NF12495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12495_high_2 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Complemental strand, 1963506 - 1963046
Alignment:
| Q |
14 |
ctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagatgctgaaaga |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963506 |
ctgtggtgcccatgatggaacaaccatcccttgttccttggttctctccaaaaacccagatggtaaaaactgtaaaggatcaacatcagatgctgaaaga |
1963407 |
T |
|
| Q |
114 |
tatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963406 |
tatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcg |
1963307 |
T |
|
| Q |
214 |
aaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccaga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1963306 |
aaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttattagcatcatcaccaga |
1963207 |
T |
|
| Q |
314 |
tgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccagg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963206 |
tgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggacccttttcaatttccagg |
1963107 |
T |
|
| Q |
414 |
aagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaact |
474 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963106 |
aagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaact |
1963046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 466
Target Start/End: Original strand, 2014923 - 2015375
Alignment:
| Q |
14 |
ctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagatgctgaaaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2014923 |
ctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaattgtaaagggtcaacatcagatgctgaaaga |
2015022 |
T |
|
| Q |
114 |
tatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcg |
213 |
Q |
| |
|
||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2015023 |
tatgcagcattggctgtattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcg |
2015122 |
T |
|
| Q |
214 |
aaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccaga |
313 |
Q |
| |
|
||||||| |||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
2015123 |
aaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaacttattagcatcatcaccaga |
2015222 |
T |
|
| Q |
314 |
tgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccagg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| | | |
|
|
| T |
2015223 |
tgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctataggaccgttttcgatttctatg |
2015322 |
T |
|
| Q |
414 |
aagctattaattagaacaccatcaaaaagacggaatttttcaacacattggag |
466 |
Q |
| |
|
|| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
2015323 |
aaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggag |
2015375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 459
Target Start/End: Original strand, 2018306 - 2018751
Alignment:
| Q |
14 |
ctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagatgctgaaaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2018306 |
ctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccctgaaggtaaaaattgtaaagggtcaacatcagatgctgaaaga |
2018405 |
T |
|
| Q |
114 |
tatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcg |
213 |
Q |
| |
|
||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2018406 |
tatgcagcattggctgtattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcg |
2018505 |
T |
|
| Q |
214 |
aaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccaga |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||| |||| |||||||||| || |
|
|
| T |
2018506 |
aaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacccattatcatcatcacccga |
2018605 |
T |
|
| Q |
314 |
tgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccagg |
413 |
Q |
| |
|
| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | ||||||||||||||| ||||||||||| ||| |
|
|
| T |
2018606 |
tttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctataggacctttttcaatttctagg |
2018705 |
T |
|
| Q |
414 |
aagctattaattagaacaccatcaaaaagacggaatttttcaacac |
459 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
2018706 |
aagctattaataagaataccatcaaaaagacggaatttttcaacac |
2018751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 54 - 437
Target Start/End: Original strand, 2011558 - 2011947
Alignment:
| Q |
54 |
gttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagat---gctgaaagatatgcagcatttgctg---tactacttggagctctta |
147 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||||| |||||||||| | |||||||||||||| ||||| | || |||||||||| |||| | |
|
|
| T |
2011558 |
gttctctccaaaaacccagatggtaaaaattgtaaagcatcaacatcattttgtgctgaaagatatgctgcattagatgaactactacttggtgctcgca |
2011657 |
T |
|
| Q |
148 |
caacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaa |
247 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||| || |||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
2011658 |
caacccataggaatttctgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaa |
2011757 |
T |
|
| Q |
248 |
aactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagca |
347 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||||| || ||||||||||||| |||| ||||| ||| ||||| ||||||||||||| | |
|
|
| T |
2011758 |
aactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattagcatcatcaacagaacctgttactgtctggatgatgggtccaacagga |
2011857 |
T |
|
| Q |
348 |
tacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacaccatca |
437 |
Q |
| |
|
|| ||| | |||| |||||||||| ||||||| ||| | |||||| ||| |||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
2011858 |
tagacagaagggttgccacttccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaagaacaccatca |
2011947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 130 - 437
Target Start/End: Original strand, 2004645 - 2004952
Alignment:
| Q |
130 |
tactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccact |
229 |
Q |
| |
|
|||||||||| |||| | |||||| |||||| | | |||||||||||||||||||||||||| |||| ||||||||||||| |||||||| || ||||| |
|
|
| T |
2004645 |
tactacttggtgctcgcaaaacccacaagaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccact |
2004744 |
T |
|
| Q |
230 |
accaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccagatgttgttagtgtttgg |
329 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||| ||||||||| | ||||| || ||| || | | ||||||| || || || || || |
|
|
| T |
2004745 |
cccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatgattagcatcaccggaactttctatcgtcggg |
2004844 |
T |
|
| Q |
330 |
ataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaa |
429 |
Q |
| |
|
|| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| | || ||||| ||||||||||||| |||| |
|
|
| T |
2004845 |
atgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaagaa |
2004944 |
T |
|
| Q |
430 |
caccatca |
437 |
Q |
| |
|
|||||||| |
|
|
| T |
2004945 |
caccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 130 - 437
Target Start/End: Complemental strand, 1965054 - 1964747
Alignment:
| Q |
130 |
tactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccact |
229 |
Q |
| |
|
|||||||||| |||| |||||||||| |||||| |||||||||||||| || |||| ||||| || | |||||||||| || |||||||| |||||||| |
|
|
| T |
1965054 |
tactacttggtgctcacacaacccataggaatttctgattactcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccact |
1964955 |
T |
|
| Q |
230 |
accaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccagatgttgttagtgtttgg |
329 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |||||||||| |||||| ||||||||| || |||||||||| |||| ||||| ||| | | |
|
|
| T |
1964954 |
cccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattagcatcacggtcagaacatgttactgtatcg |
1964855 |
T |
|
| Q |
330 |
ataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaa |
429 |
Q |
| |
|
|| ||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |||| ||||| | ||||||||||| |||| |
|
|
| T |
1964854 |
atgatgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaa |
1964755 |
T |
|
| Q |
430 |
caccatca |
437 |
Q |
| |
|
|||||||| |
|
|
| T |
1964754 |
caccatca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 437
Target Start/End: Original strand, 2007910 - 2008332
Alignment:
| Q |
21 |
gcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagat---gctgaaagatatg |
117 |
Q |
| |
|
|||||||||| |||||| | |||| ||||| ||||||||||||||||| || ||||||||||| |||| |||| |||| | |||||||||||| |
|
|
| T |
2007910 |
gcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatc |
2008009 |
T |
|
| Q |
118 |
cagcatttgctgtact---acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcga |
214 |
Q |
| |
|
| ||| | | || ||| ||| || |||| | |||||| |||||||| |||||||||||||||||||||||| | ||| ||||||| || || || |
|
|
| T |
2008010 |
ctgcactagatgaactgctactcggtgctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtga |
2008109 |
T |
|
| Q |
215 |
aagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccagat |
314 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||| |||||||| | ||||| |||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
2008110 |
aagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccattagcatcatcaccagat |
2008209 |
T |
|
| Q |
315 |
gttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccagga |
414 |
Q |
| |
|
||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || ||||||| | || ||||| |||| |
|
|
| T |
2008210 |
tttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccatctctatttctagga |
2008309 |
T |
|
| Q |
415 |
agctattaattagaacaccatca |
437 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
2008310 |
agctattaacaagaacaccatca |
2008332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 157 - 437
Target Start/End: Complemental strand, 1968963 - 1968683
Alignment:
| Q |
157 |
agaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaaca |
256 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||| ||| |||||||||| || |||||||| |||||||| || ||||| |||||||||||||| || |
|
|
| T |
1968963 |
agaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagca |
1968864 |
T |
|
| Q |
257 |
aggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaaga |
356 |
Q |
| |
|
||| | ||||| |||||||| ||||||||| || ||||||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |
|
|
| T |
1968863 |
aggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactgga |
1968764 |
T |
|
| Q |
357 |
aggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacaccatca |
437 |
Q |
| |
|
|||| |||||||| || ||| ||||||| |||||| ||| | || | ||||||||||||||||| | |||||||||| |
|
|
| T |
1968763 |
gggttgtcacttccctcctctttcattgcacttataggtcccatctccaattccaggaagctattaacaaaaacaccatca |
1968683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 270 - 458
Target Start/End: Complemental strand, 2433139 - 2432951
Alignment:
| Q |
270 |
tccaaccatatcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttc |
369 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
2433139 |
tccaaccatgacagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttc |
2433040 |
T |
|
| Q |
370 |
cttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaaca |
458 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| |||| ||||| | ||||||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2433039 |
cttcatctgtcagtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 2436922 - 2436704
Alignment:
| Q |
10 |
gaacctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatca-------- |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||| | |||||||| || ||||| ||||||||| |
|
|
| T |
2436922 |
gaacctgtggtgcccatgatggaataaccatcccttgatccttggttctctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtgc |
2436823 |
T |
|
| Q |
102 |
-gatgctgaaagatatgcagcatttgctg---tactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactca |
197 |
Q |
| |
|
|| |||||| ||||| ||| | | || ||||| |||| ||||||||||||||||||||||| ||||||||| |||||| ||| ||||||| |||| |
|
|
| T |
2436822 |
tgaaactgaaaagtatgctgcactagatgaactactatttggtgctcttacaacccataagaatttctgattactcgattccagaccgaaagccagctca |
2436723 |
T |
|
| Q |
198 |
tcaatttgttcttgcgaaa |
216 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2436722 |
acaatttgttcttgtgaaa |
2436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 560656 - 560747
Alignment:
| Q |
149 |
aacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaa |
240 |
Q |
| |
|
||||||||| |||||||| || || | |||||| ||||| || | ||||| |||||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
560656 |
aacccataaaaatttatggttgctaagttccaatcccaaggcaagctcattaatttggtcttgtgaaagtgtgcccccacttccaaaagaaa |
560747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 5902678 - 5902275
Alignment:
| Q |
18 |
ggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagat---gctgaaagat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||| ||| ||||||||||| | |||||||||| |
|
|
| T |
5902678 |
ggtgcccatgatggaataaccatcccttgctccttggttctctccaagaacccaggtggtaaaaactgcaaaagatcaacatcattttctgctgaaagat |
5902579 |
T |
|
| Q |
115 |
atgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcga |
214 |
Q |
| |
|
||||| || | |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |
|
|
| T |
5902578 |
atgcaccactggctgaactacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtga |
5902479 |
T |
|
| Q |
215 |
aagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttattagcatcatcaccagat |
314 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||| | || ||| || ||||||| |
|
|
| T |
5902478 |
aagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactcca------taccattattaccagat |
5902385 |
T |
|
| Q |
315 |
gttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccagga |
414 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
5902384 |
tctgttcttgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctttttcaatttccagga |
5902285 |
T |
|
| Q |
415 |
agctattaat |
424 |
Q |
| |
|
|||||||||| |
|
|
| T |
5902284 |
agctattaat |
5902275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 5906162 - 5905888
Alignment:
| Q |
18 |
ggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaactgtaaaggatcaacatcagat---gctgaaagat |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||| ||| || |||||||||| | |||||||||| |
|
|
| T |
5906162 |
ggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtgctgaaagat |
5906063 |
T |
|
| Q |
115 |
atgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcga |
214 |
Q |
| |
|
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||| || |
|
|
| T |
5906062 |
atgcaccacatgctgaactacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtga |
5905963 |
T |
|
| Q |
215 |
aagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactc |
289 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||||| | ||||| || |||||| ||| |||||| |
|
|
| T |
5905962 |
aagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactc |
5905888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 22139 - 22055
Alignment:
| Q |
170 |
actcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaa |
254 |
Q |
| |
|
||||||||||||||| ||||| | ||||| |||||| ||| |||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
22139 |
actcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaactgaa |
22055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 57464 - 57348
Alignment:
| Q |
134 |
acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacca |
233 |
Q |
| |
|
|||||| ||||| |||||||| | |||| | ||| ||||||||||||||| ||||| | |||| |||||| ||| |||||||| |||||||| ||| |
|
|
| T |
57464 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
57365 |
T |
|
| Q |
234 |
aaagaaacatacaaaac |
250 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
57364 |
aaagaaacatacaaaac |
57348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 2921 - 2805
Alignment:
| Q |
134 |
acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacca |
233 |
Q |
| |
|
|||||| ||||| |||||||| | |||| | ||| ||||||||||||||| ||||| | |||| || ||| ||| |||||||| |||||||| ||| |
|
|
| T |
2921 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttcca |
2822 |
T |
|
| Q |
234 |
aaagaaacatacaaaac |
250 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2821 |
aaagaaacatacaaaac |
2805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 15380 - 15496
Alignment:
| Q |
134 |
acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacca |
233 |
Q |
| |
|
|||||| ||||| |||||||| | |||| | ||| ||||||||||||||| ||||| | |||| |||||| ||| |||||||| |||||||| ||| |
|
|
| T |
15380 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
15479 |
T |
|
| Q |
234 |
aaagaaacatacaaaac |
250 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15480 |
aaagaaacatacaaaac |
15496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 8294628 - 8294733
Alignment:
| Q |
133 |
tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc |
232 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||| ||||||||| | ||| ||||| ||||| | | ||| ||||| || ||||| |||||||| || |
|
|
| T |
8294628 |
tacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcc |
8294727 |
T |
|
| Q |
233 |
aaaaga |
238 |
Q |
| |
|
|||||| |
|
|
| T |
8294728 |
aaaaga |
8294733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 33257127 - 33257025
Alignment:
| Q |
133 |
tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc |
232 |
Q |
| |
|
||||||||||||| |||||||| ||||| || ||| ||||||||| | ||| ||||| ||||||| | ||| ||||| || ||||| |||||||| || |
|
|
| T |
33257127 |
tacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcc |
33257028 |
T |
|
| Q |
233 |
aaa |
235 |
Q |
| |
|
||| |
|
|
| T |
33257027 |
aaa |
33257025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 1245 - 1143
Alignment:
| Q |
133 |
tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc |
232 |
Q |
| |
|
||||||||||||| |||||||| ||||| || ||| ||||||||| | ||| ||||| ||||||| | ||| ||||| || ||||| |||||||| || |
|
|
| T |
1245 |
tacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcc |
1146 |
T |
|
| Q |
233 |
aaa |
235 |
Q |
| |
|
||| |
|
|
| T |
1145 |
aaa |
1143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 16566542 - 16566461
Alignment:
| Q |
169 |
tactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaac |
250 |
Q |
| |
|
|||||||||||||||| || || | |||| ||| ||| ||| |||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
16566542 |
tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac |
16566461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 16599120 - 16599201
Alignment:
| Q |
169 |
tactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaac |
250 |
Q |
| |
|
|||||||||||||||| || || | |||| ||| ||| ||| |||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
16599120 |
tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac |
16599201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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