View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12495_low_1 (Length: 574)
Name: NF12495_low_1
Description: NF12495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12495_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 564
Target Start/End: Original strand, 38930986 - 38931533
Alignment:
| Q |
19 |
ctatcattgtactaatctcagctctatcatttgttttgaaaactatgtattccaatccctcactctccgcctgttctgccaccgcgaaattctgcggcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38930986 |
ctatcattgtactaatctcagctctatcatttgttttgaaaactatgtattccaatccctcactctccgcctgttctgccactgcgaaattctgcggcac |
38931085 |
T |
|
| Q |
119 |
caccaacaatcttcccctttttacctctccattgaacaccgattttccctcactattcaccacttgaaccctccctcttcctcttgttacatacattatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38931086 |
caccaacaatcttcccctttttacctctccattgaacactgattttccctcactattcaccacttgaaccctccctcttcctcttgttacgtacattatg |
38931185 |
T |
|
| Q |
219 |
ctgttcgcattcatgttccaatgtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttcaatg--taac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |
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| T |
38931186 |
ctgttcgcattcatgttccaatgtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttcagtgtctgac |
38931285 |
T |
|
| Q |
317 |
acgtgacttctgcaatacagaattgcagaatgatgcacttatttagttaccttgtagaggtaaacccattgggcactaagatgaagcaatttgagaactg |
416 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931286 |
acgtgacttctgcaattcataattgcagaatgatgcacttatttaattaccttgtagaggtaaacccattgggcactaagatgaagcaatttgagaactg |
38931385 |
T |
|
| Q |
417 |
ggagagtcaaactattgacattcgttatacgacctgctcttgggttaaacacatcggcacgtgaaggatcagctatgttctcatgaagcttcaatgtgca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931386 |
ggagagtcaaactattgacattcgttatacgacctgctcttgggttaaacacatcggcacgtgaaggatcagctatgttctcatgaagcttcaatgtgca |
38931485 |
T |
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| Q |
517 |
aacggtttcatcgaagaagttgtgttgttcttcatgttctctgcttct |
564 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
38931486 |
aacagtttcatcgaagaagttgtgttgtccttcatgttctctggttct |
38931533 |
T |
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