View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12495_low_3 (Length: 435)
Name: NF12495_low_3
Description: NF12495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12495_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 415
Target Start/End: Original strand, 29552515 - 29552905
Alignment:
| Q |
23 |
aacccaatgcccaattcaaccaggtcaagtctatatgtacaattttaccctcacaggacaaagaggaacactttggtggcatgcacatatactttggctt |
122 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29552515 |
aacccaatgcccaattcaaccaggccaggtctatatgtacaattttaccctcacaggacaaagaggaacactttggtggcatgcacatatactttggctt |
29552614 |
T |
|
| Q |
123 |
agagcaactgtacatggtgctattgtcattttgcctaagcttggagttccttacccttttcctagaccccacatggaacaagttatcatattgagtttgt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29552615 |
agagcaactgtacatggtgctattgtcattttgcctaagcttggagttccttacccttttcctagaccccacatggaacaagttatcatattgagttagt |
29552714 |
T |
|
| Q |
223 |
tcttctaccttttcctttatattttttgctaataaatacatcaattcatagagtgnnnnnnnnnnaaatggtatagggatcatggttcataaaccttaca |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29552715 |
tcttctaccttttcctttatattttttgctaataaatacatcacttcatagagt--tttttttttaaatggtatagggatcatggttcataaaccttaca |
29552812 |
T |
|
| Q |
323 |
attttcaattttgtttaggtgaatggtggaaatcagatactgaggctataataaatgaagctttgaaatctggattggccccaaatgtctctg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29552813 |
attttcaattttgtttaggtgaatggtggaaatcagatactgaggctataataaatgaagctttgaaatctggattggccccaaatgtctctg |
29552905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 35053965 - 35054065
Alignment:
| Q |
60 |
tacaattttaccctcacaggacaaagaggaacactttggtggcatgcacatatactttggcttagagcaactgtacatggtgctattgtcattttgccta |
159 |
Q |
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||||| |||||| | ||||| |||||||| |||||| |||||||||||||| |||||| || || || | ||||||||||||||||||||||||| |
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| T |
35053965 |
tacaactttaccattacaggtcaaagaggcacacttctatggcatgcacatatcacttggctaagggctacaatgcatggtgctattgtcattttgccta |
35054064 |
T |
|
| Q |
160 |
a |
160 |
Q |
| |
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| |
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|
| T |
35054065 |
a |
35054065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 35070277 - 35070377
Alignment:
| Q |
60 |
tacaattttaccctcacaggacaaagaggaacactttggtggcatgcacatatactttggcttagagcaactgtacatggtgctattgtcattttgccta |
159 |
Q |
| |
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||||| |||||| | ||||| |||||||| |||||| |||||||||||||| |||||| || || || | ||||||||||||||||||||||||| |
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| T |
35070277 |
tacaactttaccattacaggtcaaagaggcacacttctatggcatgcacatatcacttggctaagggctacaatgcatggtgctattgtcattttgccta |
35070376 |
T |
|
| Q |
160 |
a |
160 |
Q |
| |
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| |
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|
| T |
35070377 |
a |
35070377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 25091547 - 25091732
Alignment:
| Q |
23 |
aacccaatgcccaattcaaccaggtcaagtctatatgtacaattttaccctcacaggacaaagaggaacactttggtggcatgcacatatactttggctt |
122 |
Q |
| |
|
|||||||||||| |||||||| || || |||| |||||||||| || || ||||| |||||||| ||||||||||||||||| ||| | ||||||||| |
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| T |
25091547 |
aacccaatgcccgattcaaccgggccagacctatttgtacaatttcactcttacaggccaaagaggcacactttggtggcatgctcatgtcctttggctt |
25091646 |
T |
|
| Q |
123 |
agagcaactgtacatggtgctattgtcattttgcctaagcttggagttccttacccttttcctagaccccacatggaacaagttat |
208 |
Q |
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|| || ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||| | ||| || |||||||||||||| |
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| T |
25091647 |
agggctactgtccatggtgccatagtcattttacctaagcttggagttccttacccttttcccaaaccacatatggaacaagttat |
25091732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 25091821 - 25091896
Alignment:
| Q |
333 |
ttgtttaggtgaatggtggaaatcagatactgaggctataataaatgaagctttgaaatctggattggccccaaat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25091821 |
ttgtttaggtgaatggtggaaatcagatactgaggctataataaatgaagctttgaaatctggattggctccaaat |
25091896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 4382968 - 4383032
Alignment:
| Q |
346 |
tggtggaaatcagatactgaggctataataaatgaagctttgaaatctggattggccccaaatgt |
410 |
Q |
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||||||||||| |||||||| ||| | || ||||||||| | ||||| |||||||| |||||||| |
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| T |
4382968 |
tggtggaaatctgatactgaagctgttatcaatgaagctctaaaatcaggattggcaccaaatgt |
4383032 |
T |
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