View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12495_low_5 (Length: 281)
Name: NF12495_low_5
Description: NF12495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12495_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 273
Target Start/End: Original strand, 8755516 - 8755762
Alignment:
| Q |
27 |
ggaccctgaaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatcttctcgatatacccatggataggcg |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |
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| T |
8755516 |
ggaccctgaaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatctcctcaatatacccatcaataggcg |
8755615 |
T |
|
| Q |
127 |
gcgtaagcgttgccataaacatattcatcggaaaaggcgtcaaatccggcaccaaagcagtttccttcaaacccccaggcaaagcttcaatagcctcctt |
226 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8755616 |
gcgtaagcgttgccataaacatattcatcggaaacggcgtcaaatccggcaccaaagcagtttccttcaaacccccaggcaaagcttcaatagccttctt |
8755715 |
T |
|
| Q |
227 |
tttcatcctcaaaagattcgtctccgccgcttgtctcgccctatgct |
273 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
8755716 |
tttcatcctcaaaagatttgtctctgccgcttgtctcgccctatgct |
8755762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 10507012 - 10506774
Alignment:
| Q |
35 |
aaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatcttctcgatatacccatggataggcggcgtaagc |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |
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| T |
10507012 |
aaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatcttctcaatatacccatcaataggcggtgtaagc |
10506913 |
T |
|
| Q |
135 |
gttgccataaacatattcatcggaaaaggcgtcaaatccggcaccaaagcagtttccttcaaacccccaggcaaagcttcaatagcctcctttttcatcc |
234 |
Q |
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|| ||||||||| |||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10506912 |
gtcgccataaacctattcaccggaaatggagtcaaatccggcaccaaagcagcttccttcaaacccccaggcaaagcttcaatagcctcctttttcatca |
10506813 |
T |
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| Q |
235 |
tcaaaagattcgtctccgccgcttgtctcgccctatgct |
273 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
10506812 |
tcaaaagattagtctccgccgcttgtctcgccctatgct |
10506774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 10509935 - 10509890
Alignment:
| Q |
29 |
accctgaaaatcaacactaccaatctacctaatcttctccttccca |
74 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10509935 |
accctcaaaatcaacactaccaatctacctaatcttctccttccca |
10509890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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