View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12495_low_8 (Length: 219)

Name: NF12495_low_8
Description: NF12495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12495_low_8
NF12495_low_8
[»] chr4 (2 HSPs)
chr4 (19-204)||(26720460-26720645)
chr4 (23-204)||(52528864-52529050)
[»] chr8 (1 HSPs)
chr8 (19-204)||(13863560-13863750)
[»] chr1 (1 HSPs)
chr1 (19-204)||(45118244-45118431)
[»] chr2 (1 HSPs)
chr2 (19-204)||(2985604-2985793)
[»] chr6 (1 HSPs)
chr6 (156-197)||(23073266-23073307)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 26720460 - 26720645
Alignment:
Q  19 cttctaacattggaaaaagaaaacattgtaacacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttcttggaa 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720460 cttctaacattagaaaaagaaaacattgtaacacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttcttggaa 26720559  T
Q  119 aagaaaaatcttaatccttctatgtggtcannnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctg 204  Q
    ||||||||||||||||||||| ||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720560 aagaaaaatcttaatccttctttgttgtcatttttttccccttctcaatttcccaatccacgtttccttcccatctactttctctg 26720645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 52529050 - 52528864
Alignment:
Q  23 taacattggaaaaagaaaacattgtaacacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttct------ttcttcttcttgg 116  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||      |||||||||||      
T  52529050 taacattggaaaaagaaagcattgtaacacagatcctaaaatgctcctttccttgaaaccctttccatcattcatccttctctcttcttcttcttcttca 52528951  T
Q  117 aaaagaaaaatcttaatccttctatgtggtcannnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctg 204  Q
    |||| ||||||||||||| |||| | | ||||       |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52528950 aaaaaaaaaatcttaatcattctctattgtca-ttttttccccttctcaatttcccaatccacgtttccttcccatctactctctctg 52528864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 13863750 - 13863560
Alignment:
Q  19 cttctaacattggaaaaagaaaacattgtaacacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttctt---- 114  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||        
T  13863750 cttctaacactggaaaaagaaagcattgtaacacagatcgtaaaatactcctttccttgaaaccctttccatcattcatccttctttcttcttcttcaaa 13863651  T
Q  115 -ggaaaagaaaaatcttaatccttctatgtggtcannnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctg 204  Q
       |||| ||||||||||||| ||||   | ||||       |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13863650 aaaaaaaaaaaaatcttaatcattctcaattgtcatttttttccccttctcaatttcccaatccacgtttccttcccatctactctctctg 13863560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 45118431 - 45118244
Alignment:
Q  19 cttctaacattggaaaaagaaaacattgtaacacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttctt--gg 116  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |        
T  45118431 cttctaacattgaaaaaataaagcattgtaacacagatcgtaaaatgctcctttccttcaaaccctttccatcattcatccttcctttttcttcctcaaa 45118332  T
Q  117 aaaagaaaaatcttaatccttctatgtggtcannnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctg 204  Q
    |||| ||||| || ||||||||| | | ||||       |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45118331 aaaaaaaaaaactcaatccttctctattgtcacttttttccccttctcaatttcccaatccacgtttccttcccatctactttatctg 45118244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 2985604 - 2985793
Alignment:
Q  19 cttctaacattggaaaaagaaaacattgtaacacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttctt---- 114  Q
    |||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |        
T  2985604 cttctaacattgaaaaaataaagcattgtaacacaaatcgtaaaatgctcctttccttcaaactctttccatcattcatccttcttttttcttcctcaaa 2985703  T
Q  115 ggaaaagaaaaatcttaatccttctatgtggtcannnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctg 204  Q
      |||| ||||| || ||||||||| | | ||||       ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  2985704 aaaaaaaaaaaaactcaatccttctctattgtcacttttttccccttctcaatttcccaatccatgtttccttcccatctactttatctg 2985793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 23073307 - 23073266
Alignment:
Q  156 ccccttctcaatttcccaatccacgtttccttcccatctact 197  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  23073307 ccccttctcaatttccccatacacgtttccttcccatctact 23073266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University