View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12496_high_1 (Length: 428)
Name: NF12496_high_1
Description: NF12496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12496_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 34052313 - 34052694
Alignment:
| Q |
16 |
tgtgaatatcaattttacacgtctgaattcaattt-gacttattcaaaaagtaatgtgtaaccaaacataagttaagtacttctccatgagagaactttc |
114 |
Q |
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| T |
34052313 |
tgtgaatatcaattttacacgtctgaattcaattttgacttattcaaaatgtaatgtgtaaccaa-----------gtacttgtccatgagagaagtttc |
34052401 |
T |
|
| Q |
115 |
ttgaagcaattacatcaccccagttgtccacacacacatgtacagattgtccatgttacttgcagttataacatttaaagtttgccaccatatttaatac |
214 |
Q |
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| T |
34052402 |
ttgaagcaattacatcaccccagttgtccacacacacatgtacagattgtccatgttacttgcagttataacatttaaagtttgccaccctatttaatac |
34052501 |
T |
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| Q |
215 |
actgccccaaactatatatggacaataataccaaaaatattgaccc-ttttaggtgtgtgtaaactcatagtacaaattgtcaacatctttacaactaag |
313 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34052502 |
actgccccaaactata----gtcaataataccaaaaatattgaccccttttaggtgtgtgtaaactcatagtacaaattgtcaacatctttacaactaag |
34052597 |
T |
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| Q |
314 |
ggaccatgaataaatgattgaaattaacattcacttatgcattcattcaaacttatgatcttaatataccaaaaataccatgttattatatacaaac |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34052598 |
ggaccatgaataaatgattgaaattaacattcacttatgcattcattcaaacttatgatcttaatataccaaaaataccatgttattatatacaaac |
34052694 |
T |
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