View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12496_low_2 (Length: 400)
Name: NF12496_low_2
Description: NF12496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12496_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 4 - 387
Target Start/End: Complemental strand, 5073620 - 5073242
Alignment:
| Q |
4 |
caggttcattatgctagtccttgaactattgctctcttcaatttagtttttaaagtatatgaaatcgttaatttcatctctaaagtatatgaaaaatccg |
103 |
Q |
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| T |
5073620 |
caggttcattatgctagtccttaaactattgctctcttcaatttagtttttaaagtatatgaaatcgttaatttcgtctctgaagtatatgaaaaatccg |
5073521 |
T |
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| Q |
104 |
tcaattttgttggtaacatcttaatagtaacatttaatagcagcgactaaattgtctgagtttgtatactttatgtactacttttaagaactaaaatgtt |
203 |
Q |
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| T |
5073520 |
tcaattttgttggtgacatcttaatagtaacatttaatagcagcgactaaattgtctgagtttgtatact-----tactac-tttaagaactaaaatgtt |
5073427 |
T |
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| Q |
204 |
ttattcattagcgtgagacatccttacaaatcactttctataaactctatttagaccttagctctttttcaca-nnnnnnncttcttctaataaactact |
302 |
Q |
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| T |
5073426 |
ttattcattagcgtgagacatccttacaaatcactttctataaactctatttagaccttatctctttttcacattttttttcttcttctaataaactact |
5073327 |
T |
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| Q |
303 |
tgattttctttttgcaagataaatgttagtaattagttcttcgtaatgttaatgttaggggagagttcgaatccatgtcgcctct |
387 |
Q |
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| T |
5073326 |
tgattttctttttgcacgataaatgttagtaattagttcttcgtaatgttaatgttaggggagagttcgaatccatgtcgcctct |
5073242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 2055513 - 2055591
Alignment:
| Q |
54 |
taaagtatatgaaatcgtt-aatttcatctctaaagtatatgaaaaatccgtcaattttgttggtaacatcttaatagt |
131 |
Q |
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| T |
2055513 |
taaagtatatgaaatcggtcaatttagtctctaaagtatatgaaaaattggtcaatttagtccttcacatcttaatagt |
2055591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 5099561 - 5099500
Alignment:
| Q |
38 |
tcttcaatttagtttttaaagtatatgaaat-cgttaatttcatctctaaagtatatgaaaa |
98 |
Q |
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|||| |||||||| |||||| |||||||||| ||||||||| || |||||||||||||||| |
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| T |
5099561 |
tcttaaatttagtctttaaactatatgaaatccgttaatttagtccctaaagtatatgaaaa |
5099500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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