View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12496_low_3 (Length: 304)
Name: NF12496_low_3
Description: NF12496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12496_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 30047778 - 30048050
Alignment:
| Q |
13 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047778 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
30047877 |
T |
|
| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047878 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
30047977 |
T |
|
| Q |
213 |
tgagaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
285 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047978 |
tgagaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
30048050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 7160137 - 7160407
Alignment:
| Q |
15 |
cagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7160137 |
cagagacattgatgttgatgaaaatgcatattgggattggaaaaatgatgaggttcaaagaagtacagaatctgctgaaagtgctcatgacaaacaagag |
7160236 |
T |
|
| Q |
115 |
cacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7160237 |
gacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctggctgaagtttatgaaaattgcaattttgttg |
7160336 |
T |
|
| Q |
215 |
agaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
285 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
7160337 |
tgaattaaccttctagttttgaagaagcttcattaataacataatggaaagatgcaatgaaggaggagctg |
7160407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 198237 - 197965
Alignment:
| Q |
13 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198237 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
198138 |
T |
|
| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198137 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
198038 |
T |
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| Q |
213 |
tgagaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
285 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198037 |
tgagaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
197965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 3944032 - 3944304
Alignment:
| Q |
13 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3944032 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
3944131 |
T |
|
| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3944132 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccctaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
3944231 |
T |
|
| Q |
213 |
tgagaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
285 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3944232 |
tgagaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
3944304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 39951398 - 39951126
Alignment:
| Q |
13 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951398 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaattatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
39951299 |
T |
|
| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951298 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
39951199 |
T |
|
| Q |
213 |
tgagaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
285 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951198 |
tgtgaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
39951126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 26220132 - 26219861
Alignment:
| Q |
13 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||| |
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| T |
26220132 |
agcagagatattaatgttgatgaaaatgcatattcggattgagaaaatgatgaggtttaaattagtacaaaatctgctgaaattgctcctgacaaacaag |
26220033 |
T |
|
| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatg-aaaattgcaattttg |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
26220032 |
agcacataacaaatgaagatgaaaatcagatagctgaatttgattccccaattctaaggagcaaatctctggctgaagtttatgaaaaattgcaattttg |
26219933 |
T |
|
| Q |
212 |
ttgagaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagct |
284 |
Q |
| |
|
||| |||| | |||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
26219932 |
ttgtgaataagccttctag-tttgaagaagtttcattgctaacagaatggaaagatgaaatgaaggaggagct |
26219861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 22363663 - 22363932
Alignment:
| Q |
16 |
agagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagc |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22363663 |
agagacattgatgttgatgaaaatgtatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagc |
22363762 |
T |
|
| Q |
116 |
acacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
22363763 |
acacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgt |
22363862 |
T |
|
| Q |
216 |
gaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22363863 |
gaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagctg |
22363932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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