View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12497_high_1 (Length: 1086)
Name: NF12497_high_1
Description: NF12497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12497_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 974; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 974; E-Value: 0
Query Start/End: Original strand, 17 - 1068
Target Start/End: Original strand, 55173499 - 55174550
Alignment:
| Q |
17 |
tgcacatgatccacggaactcctatgtccaaggccactgccatatttgcggcccactgaacataactatctcccttctcttcataagcaagttgaatatg |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173499 |
tgcacatgatccacggaactccgatgtccaaggccactgccatatttgcggcccactgaacataactatctcccttctcttcataagcaagttgaatatg |
55173598 |
T |
|
| Q |
117 |
gttgtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagcttctcatctttcatcatttggataatttttgacacgtatgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173599 |
gttgtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagcttctcatctttcatcatttggataatttttgacacgtatgct |
55173698 |
T |
|
| Q |
217 |
ttcatgtgtttcttgtagggttcattgtcagagcggaatatgatccctggaacctctcttagccaatacggaagtcctctgatttatgaaagtattgaga |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55173699 |
ttcatgtatttcttgtagggttcattgtcagagcggaatatgatccctggaacctctcttagccaatatggaagtcctctgatttatgaaagtattgaga |
55173798 |
T |
|
| Q |
317 |
gggttagaaagaatagtaatgtataaagctaggttagaagaagcctcccacacatacatacccgtggttccattcggcttggatgaacggtccaaccctg |
416 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173799 |
gggttagaaagaatagtgatgtataaaactaggttagaagaagcctcccacacatacatacccgtggttccattcggcttggatgaacggtccaaccctg |
55173898 |
T |
|
| Q |
417 |
agggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaagttgaactgcataacgtttgataaacaaatta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55173899 |
agggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaaattgaactgcataacgtttgataaacaaatta |
55173998 |
T |
|
| Q |
517 |
agtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctcatgagcgttccaaaa |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173999 |
agtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctcatgagcgttccaaaa |
55174098 |
T |
|
| Q |
617 |
cacgtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgtctggccacgcctgaaaagtacaacatcaatcaatcttatgaatccat |
716 |
Q |
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| T |
55174099 |
cacgtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgtctggccacgcctgaaaagtacaacatcaatcaatcttatgaatccat |
55174198 |
T |
|
| Q |
717 |
catttgttgttgttatattattgtaatgatcatggatgtagtaattnnnnnnnnnnccatgaatgaattatacatcaggggtgctgcgagtgtaatggat |
816 |
Q |
| |
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||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174199 |
catctgttgttattatattattgtaatgatcatggatgtagtgattaaataaaaaaccatgaatgaattatacatcaggggtgctgcgagtgtaatggat |
55174298 |
T |
|
| Q |
817 |
ggaaccggagaagaggagctcgcgtcttccattgacaaagagtgatttaccatcataagtaacattgttaatgcctgcaacacgaccatgatcatgtgct |
916 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174299 |
ggaaccggagaagaggagctcgcgtcttccattgacaaagagtgatttaccatcataagtaacattgttaatgcctgcaacacgaccatgatcatgtgct |
55174398 |
T |
|
| Q |
917 |
gcggcaatggctggtaagagaactaataatatggaaaggaaggcgagattgtgagtgggagtcatgtttgtttggcgcaaacatacacggctcaaacaat |
1016 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55174399 |
gcgacaatggctggtaagagaactaataatatggaaaggaaggcgagattgtgagtgggagtcatgtttgtttgacgcaaacatacacggctcaaacaat |
55174498 |
T |
|
| Q |
1017 |
atgatgagagaggtggtcagaataaacgagccttcgcctggatcaaccttct |
1068 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55174499 |
atgatgagagaggtggtcagaataaacgagccttcacctggatcaaccttct |
55174550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 27721229 - 27721147
Alignment:
| Q |
52 |
actgccatatttgcggcccactgaacataactatctcccttctcttcataagcaagttgaatatggttgtactcattttcaat |
134 |
Q |
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|||||||| ||||| ||||||||||||||| ||||||| | |||||||||||||||| || |||||||||||||| ||||| |
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| T |
27721229 |
actgccatttttgcagcccactgaacataattatctccatcagcttcataagcaagttggatgtggttgtactcattctcaat |
27721147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 366 - 471
Target Start/End: Complemental strand, 27720705 - 27720600
Alignment:
| Q |
366 |
acacatacatacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcacca |
465 |
Q |
| |
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||||| ||||||||||| |||||||| ||||||||||| || |||| || ||||| || ||||||||||| ||| |||||| ||| ||| ||||||| |
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| T |
27720705 |
acacacacatacccgtgattccattcagcttggatgaaagggccaattctaagggtaacatacattcctttctcttgtacaagcttaaggaatttcacca |
27720606 |
T |
|
| Q |
466 |
aatcat |
471 |
Q |
| |
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|||||| |
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| T |
27720605 |
aatcat |
27720600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 27720854 - 27720793
Alignment:
| Q |
235 |
ggttcattgtcagagcggaatatgatccctggaacctctcttagccaatacggaagtcctct |
296 |
Q |
| |
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|||||||||| ||| ||||||||||| | || ||||||||||||||||| ||||||||||| |
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| T |
27720854 |
ggttcattgttagaacggaatatgatgtcagggacctctcttagccaatatggaagtcctct |
27720793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 27721035 - 27720986
Alignment:
| Q |
139 |
gccaagatgatggggcctccttggggagcaaagagcttctcatctttcat |
188 |
Q |
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||||||||||| ||||||||||| ||||||||||| || || |||||||| |
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| T |
27721035 |
gccaagatgatagggcctccttgaggagcaaagagtttttcttctttcat |
27720986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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