View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12497_high_1_N (Length: 715)
Name: NF12497_high_1_N
Description: NF12497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12497_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 2 - 702
Target Start/End: Original strand, 55173257 - 55173957
Alignment:
| Q |
2 |
tcagcagatctctgtgatactggatcaccaaatactctgtactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttggtcctgaga |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173257 |
tcagcagatctctgtgatactggatcaccaaatactctgtactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttggtcctgaga |
55173356 |
T |
|
| Q |
102 |
aggtatcaccacaatgtcttccattgcatgcattgatctgccaaataaaattattaaactcatgatcacatcatgactgtcctcactttgttttatgcct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173357 |
aggtatcaccacaatgtcttccattgcatgcattgatctgccaaataaaattattaaactcatgatcacatcatgactgtcctcactttgttttatgcct |
55173456 |
T |
|
| Q |
202 |
aaaattaattacttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcctatgtccaaggccactgccatatttgcggcccactg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55173457 |
aaaattaattacttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactccgatgtccaaggccactgccatatttgcggcccactg |
55173556 |
T |
|
| Q |
302 |
aacataactatctcccttctcttcataagcaagttgaatatggttgtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagc |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173557 |
aacataactatctcccttctcttcataagcaagttgaatatggttgtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagc |
55173656 |
T |
|
| Q |
402 |
ttctcatctttcatcatttggataatttttgacacgtatgctttcatgtgtttcttgtagggttcattgtcagagcggaatatgatccctggaacctctc |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173657 |
ttctcatctttcatcatttggataatttttgacacgtatgctttcatgtatttcttgtagggttcattgtcagagcggaatatgatccctggaacctctc |
55173756 |
T |
|
| Q |
502 |
ttagccaatatggaagtcctctgatttatgaaagtattgagagggttagaaagaatagtaatgtataaagctaggttagaagaagcctcccacacataca |
601 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
55173757 |
ttagccaatatggaagtcctctgatttatgaaagtattgagagggttagaaagaatagtgatgtataaaactaggttagaagaagcctcccacacataca |
55173856 |
T |
|
| Q |
602 |
tacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgt |
701 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173857 |
tacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgt |
55173956 |
T |
|
| Q |
702 |
t |
702 |
Q |
| |
|
| |
|
|
| T |
55173957 |
t |
55173957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 27721690 - 27721586
Alignment:
| Q |
41 |
tactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttggtcctgagaaggtatcaccacaatgtcttccattgcatgcattgatct |
140 |
Q |
| |
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|||||||| ||||| ||||||||||||| | |||| ||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||| |||| |
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| T |
27721690 |
tactgagcagtccagttttcagtccatatgaaaggtttgtatggtttgtttggacctgtaaaggtatcaccacagtgccttccattgcatgcattaatct |
27721591 |
T |
|
| Q |
141 |
gccaa |
145 |
Q |
| |
|
||||| |
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|
| T |
27721590 |
gccaa |
27721586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 27721296 - 27721147
Alignment:
| Q |
212 |
acttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcctatgtccaaggccactgccatatttgcggcccactgaacataacta |
311 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||||| ||| |||||||| | | | | |||||||| ||||| ||||||||||||||| || |
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| T |
27721296 |
acttacaactggatcaggagcatccttctgcttgcacatgacccatggaactccattatatagtgaaactgccatttttgcagcccactgaacataatta |
27721197 |
T |
|
| Q |
312 |
tctcccttctcttcataagcaagttgaatatggttgtactcattttcaat |
361 |
Q |
| |
|
||||| | |||||||||||||||| || |||||||||||||| ||||| |
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|
| T |
27721196 |
tctccatcagcttcataagcaagttggatgtggttgtactcattctcaat |
27721147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 593 - 698
Target Start/End: Complemental strand, 27720705 - 27720600
Alignment:
| Q |
593 |
acacatacatacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcacca |
692 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||| || |||| || ||||| || ||||||||||| ||| |||||| ||| ||| ||||||| |
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| T |
27720705 |
acacacacatacccgtgattccattcagcttggatgaaagggccaattctaagggtaacatacattcctttctcttgtacaagcttaaggaatttcacca |
27720606 |
T |
|
| Q |
693 |
aatcat |
698 |
Q |
| |
|
|||||| |
|
|
| T |
27720605 |
aatcat |
27720600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 523
Target Start/End: Complemental strand, 27720854 - 27720793
Alignment:
| Q |
462 |
ggttcattgtcagagcggaatatgatccctggaacctctcttagccaatatggaagtcctct |
523 |
Q |
| |
|
|||||||||| ||| ||||||||||| | || ||||||||||||||||||||||||||||| |
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|
| T |
27720854 |
ggttcattgttagaacggaatatgatgtcagggacctctcttagccaatatggaagtcctct |
27720793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 27721035 - 27720986
Alignment:
| Q |
366 |
gccaagatgatggggcctccttggggagcaaagagcttctcatctttcat |
415 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| || || |||||||| |
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|
| T |
27721035 |
gccaagatgatagggcctccttgaggagcaaagagtttttcttctttcat |
27720986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 42989290 - 42989343
Alignment:
| Q |
212 |
acttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcc |
265 |
Q |
| |
|
|||||| || ||||| |||||||| | |||||||||||||||||||||||||| |
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|
| T |
42989290 |
acttacaacaggatcaggagcatcatcttgcttgcacatgatccacggaactcc |
42989343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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