View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12497_high_2 (Length: 401)
Name: NF12497_high_2
Description: NF12497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12497_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 55174550 - 55174175
Alignment:
| Q |
1 |
agaaggttgatccaggcgaaggctcgtttattctgaccacctctctcatcatattgtttgagccgtgtatgtttgcgccaaacaaacatgactcccactc |
100 |
Q |
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| T |
55174550 |
agaaggttgatccaggtgaaggctcgtttattctgaccacctctctcatcatattgtttgagccgtgtatgtttgcgtcaaacaaacatgactcccactc |
55174451 |
T |
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| Q |
101 |
acaatctcgccttcctttccatattattagttctcttaccagccattgccgcagcacatgatcatggtcgtgttgcaggcattaacaatgttacttatga |
200 |
Q |
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| T |
55174450 |
acaatctcgccttcctttccatattattagttctcttaccagccattgtcgcagcacatgatcatggtcgtgttgcaggcattaacaatgttacttatga |
55174351 |
T |
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| Q |
201 |
tggtaaatcactctttgtcaatggaagacgcgagctcctcttctccggttccatccattacactcgcagcacccctgatgtataattcattcatggnnnn |
300 |
Q |
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| T |
55174350 |
tggtaaatcactctttgtcaatggaagacgcgagctcctcttctccggttccatccattacactcgcagcacccctgatgtataattcattcatgg-ttt |
55174252 |
T |
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| Q |
301 |
nnnnnnnaattactacatccatgatcattacaataatataacaacaacaaatgatggattcataagattgattgatg |
377 |
Q |
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| T |
55174251 |
tttatttaatcactacatccatgatcattacaataatataataacaacagatgatggattcataagattgattgatg |
55174175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 27720258 - 27720302
Alignment:
| Q |
239 |
tcttctccggttccatccattacactcgcagcacccctgatgtat |
283 |
Q |
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| T |
27720258 |
tcttctccggttccatccattatccacgaagcacccctgatgtat |
27720302 |
T |
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