View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12497_high_3 (Length: 389)
Name: NF12497_high_3
Description: NF12497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12497_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 2 - 375
Target Start/End: Original strand, 39454315 - 39454688
Alignment:
| Q |
2 |
attttatagtgaattcaaacatgcaccaagtttcaacaaaaatgaggatgtgactgtgattttgtcaaacttaccgaatatgcagttagtcaattgagtt |
101 |
Q |
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| T |
39454315 |
attttatagtgaattcaaacatgcaccaagtttcaacaaaaatgaggatgtgaccgtgattttgtcaaacttaccgaatatgcagttagtcaattgagtt |
39454414 |
T |
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| Q |
102 |
tgttaaccatgtgtgtagggtttattatttgaggagaaaaacaggttaggttcagctccaccaacatgtcacaacaaatgtaaccaatgtcatccatgca |
201 |
Q |
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| T |
39454415 |
tgttaaccatgtgtgtagggtttattatttgaggagaaaaacaggttaggttcagctccaccaacatgtcacaacaaatgtaaccaatgtcatccatgca |
39454514 |
T |
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| Q |
202 |
tggccgtgcaagttccaagccatgaacatgtccaaccaggtcacactgcctcaacttcatccacggaaggtggtaatttctttctccaaggtaacaataa |
301 |
Q |
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| T |
39454515 |
tggccgtgcaagttccaagccatgaacatgtccaaccaggtcacactgcctcaacttcatccacggaaggtgttaatttctttctccaaggtaacaataa |
39454614 |
T |
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| Q |
302 |
tggatactcaaattacaagccattgagttggaaatgccattgtggtgacaacttcttcaacccttagaaattcc |
375 |
Q |
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| T |
39454615 |
tggatactcaaattacaagccattgagttggaaatgccattgtggtggcaacttcttcaacccttagaaattcc |
39454688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 37666442 - 37666503
Alignment:
| Q |
306 |
tactcaaattacaagccattgagttggaaatgccattgtggtgacaacttcttcaaccctta |
367 |
Q |
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| T |
37666442 |
tactcaaattacaagccattagggtggaaatgtcattgtggtgaccacttcttcaaccctta |
37666503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 37666249 - 37666341
Alignment:
| Q |
113 |
tgtgtagggtttattatttgaggagaaaaacaggttaggttcagctccaccaacatgtcacaacaaatgtaaccaatgtcatccatgcatggc |
205 |
Q |
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|||||||| || |||||||| ||||||||||||||||||||| ||||||| ||||||| ||| || || | ||||||||||||||||| |
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| T |
37666249 |
tgtgtaggagttgttatttgaagagaaaaacaggttaggttcaatgccaccaagttgtcacagcaagtgcaatgagtgtcatccatgcatggc |
37666341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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