View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12497_high_4 (Length: 361)
Name: NF12497_high_4
Description: NF12497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12497_high_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 42158794 - 42159146
Alignment:
| Q |
9 |
tgagatgaagtaaaagttccgccaaggttgtgtatgccaagcccttcacttcaggagacttgaaagtaggcagagttacttcggagccatgagaagcgat |
108 |
Q |
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| T |
42158794 |
tgagaagaagtaaaagttccgccaaggttgtgtatgccaagcccttcacttcaggagacttgaaagtaggcagagttatttcggagccatgagaagcgat |
42158893 |
T |
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| Q |
109 |
gaagtttgaaaccaattcagcgtctctgaggctgatgtatcgcagattcaattcaacttcaacttcttcgtcgttctcagttgcttgttgttgattgata |
208 |
Q |
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| T |
42158894 |
gaagtttgaaaccaaatcagcgtctctgaggctgatgtatcgcagattcaattcaacttcaacttcttcgtcgttctcagttgcttgttgttgattgata |
42158993 |
T |
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| Q |
209 |
tgtgattgaaaatgcacatctacgttcgtcattgctgttttggaaaccctaaaattataagacaaaagcattattatgtaatcgatcgaagatgtaaagt |
308 |
Q |
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| T |
42158994 |
tgtgattgaaaatgcacctctacgttcgtcattgctgttttggaaaccctaaaattataagacaaaagcattattatgtaatcgatcaaagatgtaaagt |
42159093 |
T |
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| Q |
309 |
aaagtaaacgaatatgaaatagcgtacgaatggattgatgatcatgataagaa |
361 |
Q |
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| T |
42159094 |
aaagtacacgaatatgaaatagcgtacgaatggattgatgatcatgataagaa |
42159146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 43047407 - 43047448
Alignment:
| Q |
270 |
acaaaagcattattatgtaatcgatcgaagatgtaaagtaaa |
311 |
Q |
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| T |
43047407 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaa |
43047448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 43065507 - 43065466
Alignment:
| Q |
270 |
acaaaagcattattatgtaatcgatcgaagatgtaaagtaaa |
311 |
Q |
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| T |
43065507 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaa |
43065466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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