View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12497_high_7 (Length: 311)
Name: NF12497_high_7
Description: NF12497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12497_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 42563519 - 42563227
Alignment:
| Q |
1 |
aaattgagtgaaagtttgaagaaaaggtgcatttatatcagatcaatgttttgcaacttccaattcattttaactatgaagccatgtattgaggtattgt |
100 |
Q |
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| T |
42563519 |
aaattgagtgaaagtttgaagaaaaggtgcatttatatcagatcaatgttttgcaacttccaattcattttaactatgaagccatgtattgaggtattgt |
42563420 |
T |
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| Q |
101 |
gtattatatgtaacagt-------------tgatgttttctatgatcacttttgattctgaatgtggaaaatctaagtgacgatgaaaaacaaggctctt |
187 |
Q |
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| T |
42563419 |
gtattatatgtaacagtatatgctatcagttgatgatttctatgatcacttttgattctgaatgtggaaaatctaagtgacgatgaaaaacaaggctctt |
42563320 |
T |
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| Q |
188 |
actatagtgcatatttcttggtatgtattcatcttcaagtggaattaattttttgcatagctccttttgttattgaacaaaattgaagaacac |
280 |
Q |
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| T |
42563319 |
actatagtgcatatttcttggtatgtattcatcttcaagtggaattaattttttgcatagctccttttgttattgaacaaaattgaacaacac |
42563227 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 36309133 - 36309079
Alignment:
| Q |
2 |
aattgagtgaaagtttgaagaaaaggtgcatttatatcagatcaatgttttgcaact |
58 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
36309133 |
aattgagtgaaagtttgaagaaaaggtgcatt--gatcagatcaatgatttgcaact |
36309079 |
T |
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