View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12498_low_12 (Length: 251)

Name: NF12498_low_12
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12498_low_12
NF12498_low_12
[»] chr7 (2 HSPs)
chr7 (78-236)||(34950257-34950422)
chr7 (1-46)||(34950135-34950180)
[»] chr6 (1 HSPs)
chr6 (66-148)||(10353876-10353958)
[»] chr4 (2 HSPs)
chr4 (1-40)||(37863938-37863977)
chr4 (7-44)||(29263413-29263450)
[»] chr1 (1 HSPs)
chr1 (1-44)||(38170674-38170717)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 34950257 - 34950422
Alignment:
Q  78 attcaaatagggcctaaacaaatgcaacaatgattaaaaagaaggattcattttaattcaagagaacatga-------tgaaagaaagaggaaaaggatt 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  34950257 attcaaatagggcctaaacaaatgcaacaatgattaaaaagaaggattcattttaattcaagagaacatgatgaatgatgaaagaaagaggaaaaggatt 34950356  T
Q  171 gttaccaagattgaacactgcgagttgtagtatcgatagaagtaagttgcgattgcaacaagtttg 236  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34950357 gttaccgagattgaacactgcgagttgttgtatcgatagaagtaagttgcgattgcaacaagtttg 34950422  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34950135 - 34950180
Alignment:
Q  1 ttatgaaaacagcttttgatacgttcataagttgttttcagcttct 46  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||    
T  34950135 ttatgaaaacatcttttgatacgttcataaattgttttcagcttct 34950180  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 10353876 - 10353958
Alignment:
Q  66 attaagttgtttattcaaatagggcctaaacaaatgcaacaatgattaaaaagaaggattcattttaattcaagagaacatga 148  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||||||||||||    
T  10353876 attaagttgtttattcaaatagggcctaaacaaatgcaccaatgattaaaaggaacaattcattttaattcaagagaacatga 10353958  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 37863938 - 37863977
Alignment:
Q  1 ttatgaaaacagcttttgatacgttcataagttgttttca 40  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  37863938 ttatgaaaacagcttatgacacgttcataagttgttttca 37863977  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 29263450 - 29263413
Alignment:
Q  7 aaacagcttttgatacgttcataagttgttttcagctt 44  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagctt 29263413  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38170674 - 38170717
Alignment:
Q  1 ttatgaaaacagcttttgatacgttcataagttgttttcagctt 44  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||    
T  38170674 ttatgaaaacagcttatgacatgttcataagttgttttcagctt 38170717  T

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