View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12498_low_13 (Length: 249)
Name: NF12498_low_13
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41521136 - 41521360
Alignment:
| Q |
1 |
ccaatagagattattgtattttttatttataatttttgataagtaatttacgatatgaaaagtatttaatagaaaattcttttggtaattgtacttagac |
100 |
Q |
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| T |
41521136 |
ccaatagagattattgtattttttatttataatttttgataagtaatttacgatatgaaaagtatttaatagaaaattcttttggtaattgtacttagac |
41521235 |
T |
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| Q |
101 |
ttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctacccttgaactattttactactt |
200 |
Q |
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| T |
41521236 |
ttttcaactcattcatcttttgatttcaccattttctaaaaata--------------cttcagcttttgttcttctacccttgaactattttactactt |
41521321 |
T |
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| Q |
201 |
cccaacaactctcatcgaaattgtttcatttatattctt |
239 |
Q |
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| T |
41521322 |
cccaacaagtctcatctaaattgtttcatttatattctt |
41521360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 473410 - 473251
Alignment:
| Q |
80 |
ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac |
179 |
Q |
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| T |
473410 |
ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac |
473311 |
T |
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| Q |
180 |
ccttgaactattttactacttcccaacaactctcatcgaaattgtttcatttatattctt |
239 |
Q |
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| T |
473310 |
ccttgaactattttactaattcccaacaactctcatctaaattgtttcatttatattctt |
473251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 1242929 - 1242712
Alignment:
| Q |
1 |
ccaatagagattattgtattttttatttataatttttgataagtaatttacgata-------tgaaaagtatttaatagaaaattcttttggtaattgta |
93 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1242929 |
ccaatagatattattgtattttttatttataatttttgataagtaatttacgatagaaactatgaaaagtatttaatagaaaattcttttggtaattgta |
1242830 |
T |
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| Q |
94 |
cttagacttttcaactcattca-tcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctacccttgaactattt |
192 |
Q |
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|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| |
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| T |
1242829 |
cttagacttttcaactcattcatttttttaatttcaccattttctaaaaatacttttcgaccaccgcttcagcttttgttcttctacc------ccattt |
1242736 |
T |
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| Q |
193 |
tactacttcccaacaactctcatc |
216 |
Q |
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|||||||||||||||| ||||||| |
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| T |
1242735 |
tactacttcccaacaagtctcatc |
1242712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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