View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12498_low_14 (Length: 245)
Name: NF12498_low_14
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 21114431 - 21114665
Alignment:
| Q |
1 |
cgccaaaaaacaatacaaacaatcattttttcttcaatattatgtaccagtataaattaagttttccttaaggaccgnnnnnnntatttttgccctatgt |
100 |
Q |
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| T |
21114431 |
cgccaaaaaacaatacaaacaatcattttttcttcaatattatgtaccagtataaattaagttttccttaaggaccgaaaaaaatatttttgccctatgt |
21114530 |
T |
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| Q |
101 |
attatgaattgaactttacannnnnnncttgattgaattataggatgttctattttttctttgaatcaagagacactcctaaggatgacccagttgtgat |
200 |
Q |
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| T |
21114531 |
gttatgaattgaactttacatttttttcttgattgaattataggatgttctattttttctttgaatcacgagacactcctaaggatgacccagttgtgat |
21114630 |
T |
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| Q |
201 |
atggttgactggaggtccaggttgcggcagtgaac |
235 |
Q |
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| T |
21114631 |
atggttgactggaggtccaggttgcggcagtgaac |
21114665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 21144250 - 21144353
Alignment:
| Q |
132 |
attgaattataggatgttctattttttctttgaatcaagagacactcctaaggatgacccagttgtgatatggttgactggaggtccaggttgcggcagt |
231 |
Q |
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| T |
21144250 |
attgaatttcaggatgttctattttttctttgaatcaagaaaaaataataaggatgccccagttgtgatatggttgactggaggtccaggttgcagtagt |
21144349 |
T |
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| Q |
232 |
gaac |
235 |
Q |
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|||| |
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| T |
21144350 |
gaac |
21144353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 21124174 - 21124263
Alignment:
| Q |
146 |
tgttctattttttctttgaatcaagagacactcctaaggatgacccagttgtgatatggttgactggaggtccaggttgcggcagtgaac |
235 |
Q |
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| T |
21124174 |
tgttctattttttctttgaatcaagaaaaaataataaggatgccccagttgtgatatggttgactggaggtccaggttgcagtagtgaac |
21124263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 21149434 - 21149527
Alignment:
| Q |
132 |
attgaattataggatgttctattttttctttgaatcaagagacactcctaaggatgacccagttgtgatatggttgactggaggtccaggttgc |
225 |
Q |
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| T |
21149434 |
attgaattacaggatgttctactatttctttaaatcaagaaacaatactaatgatgacccggttgtgatatggttggctggaggtcctggttgc |
21149527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 40852009 - 40851920
Alignment:
| Q |
142 |
aggatgttctattttttctttgaatcaagagacactcctaaggatgacccagttgtgatatggttgactggaggtccaggttgcggcagtgaa |
234 |
Q |
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|||||||||||||||||||||||||| || ||||| ||||||||||| ||||| |||||||| |||||||| ||||| ||| |||||||| |
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| T |
40852009 |
aggatgttctattttttctttgaatctcgaaacact---aaggatgaccctgttgttatatggttaactggagggccaggatgcagcagtgaa |
40851920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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