View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12498_low_15 (Length: 227)
Name: NF12498_low_15
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39941075 - 39940849
Alignment:
| Q |
1 |
aacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
39941075 |
aacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgacta |
39940976 |
T |
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| Q |
101 |
ttgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggtttcgac |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39940975 |
ttgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgac |
39940876 |
T |
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| Q |
201 |
gtcacgtcgatgaggttctgaagccat |
227 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
39940875 |
gtcacgtcgatgaggttctggagccat |
39940849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 39956731 - 39956530
Alignment:
| Q |
26 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttctg |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
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| Q |
126 |
ccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
225 |
Q |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
39956532 |
T |
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| Q |
226 |
at |
227 |
Q |
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|| |
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| T |
39956531 |
at |
39956530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 28750706 - 28750890
Alignment:
| Q |
4 |
ccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattg |
103 |
Q |
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||||| ||||||||||| || |||||||||||||| |||||||||| ||||||||| || || ||||||||||| || ||||||| |||| | | ||||| |
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| T |
28750706 |
ccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagactcgcaaatattg |
28750805 |
T |
|
| Q |
104 |
ccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatc |
188 |
Q |
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||||||| || |||||||||||||||| |||||||||| ||||||||||||| ||||| || |||||||| || ||||||||||| |
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| T |
28750806 |
ccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatc |
28750890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 28741858 - 28742020
Alignment:
| Q |
1 |
aacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactacta |
100 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||| |||||| | || |
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| T |
28741858 |
aacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagactcacgaata |
28741957 |
T |
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| Q |
101 |
ttgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaa |
163 |
Q |
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||||||||| |||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
28741958 |
atgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 7961143 - 7961298
Alignment:
| Q |
5 |
cagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgc |
104 |
Q |
| |
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|||| |||||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || | || | || |||||| | ||| || |
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| T |
7961143 |
cagcagaaacatttaatgaaggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagc |
7961242 |
T |
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| Q |
105 |
cctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaacccctttt |
160 |
Q |
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| T |
7961243 |
cataaccgtgacattttggtgccacataggaactgattttccttcaaacccttttt |
7961298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 7963662 - 7963852
Alignment:
| Q |
1 |
aacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactga-taacatgatactcactact |
99 |
Q |
| |
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|||||||| |||||||||| || ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| || ||||||| |||||| | | |
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| T |
7963662 |
aacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactcacgaat |
7963761 |
T |
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| Q |
100 |
attgccctaaccgtaacctgtttctgccacgaaggaacaga-ttttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcg |
189 |
Q |
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|| | ||||||| |||| | ||||||||| ||||| || ||||||||||||| | ||||| || ||||||| || | |||||||||| |
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| T |
7963762 |
ataggcctaaccataacatttttctgccatataggaattgatttttccttcaaacactttttccacataaatctcctctaattgttcatcg |
7963852 |
T |
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