View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12498_low_16 (Length: 226)
Name: NF12498_low_16
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 49277968 - 49277767
Alignment:
| Q |
18 |
gttactacgtatttccactttgggctgacaatggaggcataacattaggacaaacaagaaacaaaacatgccctcttgatgttatccgtaaccctgaagc |
117 |
Q |
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| T |
49277968 |
gttactacgtatttccactttgggctgacaatggaggcataacattaggacaaacaagaaacaaaacatgccctcttgatgttatccgtaaccctgaagc |
49277869 |
T |
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| Q |
118 |
cattggctcgccagtttatttctatgaatatgaac-----tacattccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagt |
212 |
Q |
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| T |
49277868 |
cattggctcgccagtttatttctatgaatatgaacatgattacattccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagt |
49277769 |
T |
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| Q |
213 |
ga |
214 |
Q |
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|| |
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| T |
49277768 |
ga |
49277767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 49272045 - 49271842
Alignment:
| Q |
18 |
gttactacgtatttccactttgggctgacaatggaggcataacattaggacaaacaagaaacaaaacatgccctcttgatgttatccgtaaccctgaagc |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
49272045 |
gttactacgtatttccactttgggccgacaatggaggcattacattaggacacacaagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgc |
49271946 |
T |
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| Q |
118 |
cattggctcgccagtttatttctatgaa-----tatgaactacattccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagt |
212 |
Q |
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| T |
49271945 |
aatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctcactgacctcaccattgagattcctattctgggtagtccttgcaat |
49271846 |
T |
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| Q |
213 |
gaac |
216 |
Q |
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|||| |
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| T |
49271845 |
gaac |
49271842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 49269545 - 49269483
Alignment:
| Q |
70 |
aacaagaaacaaaacatgccctcttgatgttatccgtaaccctgaagccattggctcgccagt |
132 |
Q |
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|||||||||||||||||| ||||||||||| || ||||||||| ||| | ||||||||||| |
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| T |
49269545 |
aacaagaaacaaaacatgtcctcttgatgtaattcgtaaccctaaagaactcggctcgccagt |
49269483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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