View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12498_low_17 (Length: 202)
Name: NF12498_low_17
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_17 |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 14753809 - 14753647
Alignment:
| Q |
24 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcattggaaaaagttaaagaagaaattgatctccacattggcaaagaga |
123 |
Q |
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| T |
14753809 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcattggaaaaagttaaagaagaaattgatcgccacattggcaaagaga |
14753710 |
T |
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| Q |
124 |
gattatgcatcaccgagtccgatattaacaagttggtatatcttcaagctgttgtcaaagaaa |
186 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
14753709 |
gattatgcatcaccgagtccgatattaacaagttagtataccttcaagctgttgtcaaagaaa |
14753647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 14711738 - 14711576
Alignment:
| Q |
24 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcattggaaaaagttaaagaagaaattgatctccacattggcaaagaga |
123 |
Q |
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| T |
14711738 |
agcagtgttacacacacatgggctttgtgcctattattgaacaatcctcatacactggaaaaagttaaagaagaaattgatctccacattggaaaagaga |
14711639 |
T |
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| Q |
124 |
gattatgcatcaccgagtccgatattaacaagttggtatatcttcaagctgttgtcaaagaaa |
186 |
Q |
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| T |
14711638 |
gactatgcattcttgagtcagatattaacaagttggtataccttcaagcagttgtcaaagaaa |
14711576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 254 - 417
Alignment:
| Q |
24 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcatt-ggaaaaagttaaagaagaaattgatctccacattggcaaagag |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
254 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcattaggaaaaagttaaagaagaaattgatcgccacattggcaaagag |
353 |
T |
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| Q |
123 |
agattatgcatcaccgagtccgatattaacaagttggtatatcttcaagctgttgtcaaagaaa |
186 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
354 |
agattatgcatcaccgagtccgatattaacaagttagtataccttcaagctgttgtcaaagaaa |
417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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