View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12498_low_3 (Length: 368)
Name: NF12498_low_3
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 34864529 - 34864890
Alignment:
| Q |
1 |
atatcatcaacatacttaaatcctgaactattcaagttgtaacgagcagtcctgcctatacaacagaagtagatgcagtttctttcaaatccataataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34864529 |
atatcatcaacatacttaaatcctgaactattcaagttgtaacgagcagtcctgcctatacaacagaagtagatgcagtttctttcaaatccataataat |
34864628 |
T |
|
| Q |
101 |
cattagcagacaatgaaaagtttaagtctttacccaaaacaaacagattatcacccaagtctgttacacgaagccatctacttgattctccatcaacgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34864629 |
cattagcagacaatgaaaagtttaagtctttacccaaaacaaacagattatcacccaagtctgttacacgaagccatctacttgattctccatcaacgtt |
34864728 |
T |
|
| Q |
201 |
taaaacactgatatccatgagtaatttgcaggtattcacaccagttcttctagaatacatttcaaccacaaaaagacttccatgtgactccaccaaacac |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34864729 |
taaaacactgatatccatgagtaatttgcaggtattcacgccagttcttctagaatacatttcaaccacaaaaagacttccatgtgagtccaccaaacac |
34864828 |
T |
|
| Q |
301 |
ttcttgctacgatcattacttaaggagggtgaacattgaaccaacttaaaggatgaacaatt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34864829 |
ttcttgctacgatcattacttaaggagggtgaacattgaaccaacttaaaggatgaacaatt |
34864890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 133 - 362
Target Start/End: Complemental strand, 51858828 - 51858599
Alignment:
| Q |
133 |
cccaaaacaaacagattatcacccaagtctgttacacgaagccatctacttgattctccatcaacgtttaaaacactgatatccatgagtaatttgcagg |
232 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||| | |
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| T |
51858828 |
cccaaaacaaacagaacatcacccaagtatgttacacgaagccatctacttgattcttcatcaatcttcaaaacactgatatccatgactaatttgcatg |
51858729 |
T |
|
| Q |
233 |
tattcacaccagttcttctagaatacatttcaaccacaaaaagacttccatgtgactccaccaaacacttcttgctacgatcattacttaaggagggtga |
332 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||| ||||||| ||||||||||||| |
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|
| T |
51858728 |
tattcatagcagttcttctgaaatacatttcaaccacaaaaagacttccacgcgcctccaccaaacgcttcttgctaccatcattatttaaggagggtga |
51858629 |
T |
|
| Q |
333 |
acattgaaccaacttaaaggatgaacaatt |
362 |
Q |
| |
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| | |||||||||||| |||||||||||| |
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|
| T |
51858628 |
agaccgaaccaacttaatggatgaacaatt |
51858599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 9514730 - 9514822
Alignment:
| Q |
66 |
gaagtagatgcagtttctttcaaatccataataatcattagcagacaatgaaaagtttaagtctttacccaaaacaaacagattatcacccaa |
158 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||| |||| || |||||||||||| ||||||||||||||| |||| || ||||||||| |
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|
| T |
9514730 |
gaagtaaatgcaatttctttcaaatccatggtaatctttagttgataatgaaaagtttgagtctttacccaaaagaaacgaataatcacccaa |
9514822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 35521189 - 35521111
Alignment:
| Q |
65 |
agaagtagatgcagtttctttcaaatccataataatcattagcagacaatgaaaagtttaagtctttacccaaaacaaa |
143 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||| | ||| |||||| ||||||| ||||||||| ||||||||| |
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|
| T |
35521189 |
agaaatagatgcaatttccttcaaatccataataatcttgagctaacaatgcaaagtttgagtctttactcaaaacaaa |
35521111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 9514899 - 9514995
Alignment:
| Q |
262 |
tcaaccacaaaaagacttccatgtgactccaccaaacacttcttgctacgatcattacttaaggagggtgaacattgaaccaacttaaaggatgaac |
358 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| ||||||| ||| | | || ||||| || ||| |||||||||||||||||||||||| |
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|
| T |
9514899 |
tcaaccacaaagagacttccttgtgactccaccaaatacttctttttaccaactttgtttaagttaggcgaaaattgaaccaacttaaaggatgaac |
9514995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 51859444 - 51859401
Alignment:
| Q |
97 |
taatcattagcagacaatgaaaagtttaagtctttacccaaaac |
140 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
51859444 |
taatcattaacagacaatgaaaagttcaagtctttacccaaaac |
51859401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 51859872 - 51859832
Alignment:
| Q |
66 |
gaagtagatgcagtttctttcaaatccataataatcattag |
106 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||| |
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| T |
51859872 |
gaagtagatgcaatttttttcaaatccataataatcattag |
51859832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 34146017 - 34145901
Alignment:
| Q |
67 |
aagtagatgcagtttctttcaaatccataataatcattagcagacaatgaaaagtttaagtctttacccaaaacaaacagattatcacccaagtctgtta |
166 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| || ||||| || |||||||||||| ||||||| || || |||||||||| |||||||||||||| || |
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| T |
34146017 |
aagtaaatgcaatttctttcaaatccataatagtctttagctgataatgaaaagtttgagtctttgcctaacacaaacagatcatcacccaagtctgata |
34145918 |
T |
|
| Q |
167 |
cacgaagccatctactt |
183 |
Q |
| |
|
|||| | |||||||||| |
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|
| T |
34145917 |
cacggaaccatctactt |
34145901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 35548475 - 35548547
Alignment:
| Q |
73 |
atgcagtttctttcaaatccataataatcattagcagacaatgaaaagtttaagtctttacccaaaacaaaca |
145 |
Q |
| |
|
||||| ||||||| | |||||||||| || | ||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
35548475 |
atgcaatttctttgacatccataatagtcttgagctatcaatgaaaagtttgagtctctacccaaaacaaaca |
35548547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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