View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12498_low_4 (Length: 356)
Name: NF12498_low_4
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 167 - 345
Target Start/End: Complemental strand, 21794203 - 21794024
Alignment:
| Q |
167 |
tttcattagcaattaaatcatttatacacgtcggtacatcatcaaagatatagaagctaagtaaggatgtggctgcctatgttgatttgtg-ttaacctc |
265 |
Q |
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| T |
21794203 |
tttcattagcaattaaattatttatacacgtcggtacatcatccaagatatagaagctaggtaaggatttgtctgcctatactgatttgtggttaacctt |
21794104 |
T |
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| Q |
266 |
attcacttgtctcttaatgaactcaaggtgaaagtttgttaaataaagagaacaatagctcaaaattcggtgatgtccat |
345 |
Q |
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| T |
21794103 |
attgacttgtctcttaatgaactcaacatgaaagtttgttaaataaagagaacaatagctcaaaattcggtgatgtccat |
21794024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 21794309 - 21794206
Alignment:
| Q |
19 |
atcaaggtgaattctttggatagtgcattgtgttgattttcgtgaagtgtttagatatagaccgagttatatcaattaaattgg---tcactatgacatt |
115 |
Q |
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| T |
21794309 |
atcaaggtgaattctttggatagtgcattgtgttgattttcgtgaagtgtttagatatagaccgagttatatcaattaaattggtgatcaccatgacatt |
21794210 |
T |
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| Q |
116 |
atca |
119 |
Q |
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| T |
21794209 |
atca |
21794206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 322
Target Start/End: Original strand, 9834473 - 9834630
Alignment:
| Q |
166 |
atttcattagcaattaaatcatttatacacgtcggtacatcatcaaagatatagaagctaagtaaggatgtggctgcctatgttgatttgt-gttaacct |
264 |
Q |
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| T |
9834473 |
atttcattagcaatcaaattatttatacatgtcggtaaatcatcaaaaatacgggagctaagtaaagacgtggatgcatttgttaattcgtggacaacct |
9834572 |
T |
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| Q |
265 |
cattcacttgtctcttaatgaactcaaggtgaaagtttgttaaataaagagaacaata |
322 |
Q |
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| T |
9834573 |
cgttcgcttgtcttctagtaaacccaacacgagagtttgttaaataaagagaacaata |
9834630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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