View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12498_low_5 (Length: 351)
Name: NF12498_low_5
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 330
Target Start/End: Original strand, 6214699 - 6215023
Alignment:
| Q |
6 |
tcactgaaaaagagcattcgacacattatttcaggaaatactataacttaattagtagtatagtatagtatagtgtacctgcaagcagaccattttgtgc |
105 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6214699 |
tcactgaaaaagaccattagacacattaattcaggaaatactataacataattagtagtatagtatagtatagtgtacctgcaaggagaccattttgtgc |
6214798 |
T |
|
| Q |
106 |
gtttgacatggagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaaatttcattt |
205 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6214799 |
gtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcgacattactgacctgcaaatttcattt |
6214898 |
T |
|
| Q |
206 |
aagaagaattttgtaattaatttcttatattcactattcagtaaactttattgtttatttttatccaacactttaaatttaatcagatagtctatccgtt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6214899 |
aagaagaattttgtaattaatttcttatattcactattcagtaaactttattgtttaattttatccaacactttaaatttaatcagatagtctatccgtt |
6214998 |
T |
|
| Q |
306 |
atttgttataggttcatcaaccatc |
330 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6214999 |
atttgttataggttcatcaaccatc |
6215023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 6207111 - 6207257
Alignment:
| Q |
78 |
gtgtacctgcaagcagaccattttgtgcgtttgacatggagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggt |
177 |
Q |
| |
|
|||||||||||| |||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
6207111 |
gtgtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggt |
6207210 |
T |
|
| Q |
178 |
cgacattactgacctgcaaatttcatttaagaagaattttgtaattaa |
225 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6207211 |
cgatattactgacctgcaaatttcatttaagaag-attttgtaattaa |
6207257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 233
Target Start/End: Original strand, 6177299 - 6177463
Alignment:
| Q |
76 |
tagtgtacctgcaagcagaccattttgtgcgtttgacatggagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagg |
175 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||| ||||||| |||||||| || || |||||||| | | | ||||||||||||| |||||| |
|
|
| T |
6177299 |
tagtgtacctgcaagaagaccattttgtgggtttaacatgaagagcctcttgaactttaggtaggtttaaataagcattagtataatcttcagaacaagg |
6177398 |
T |
|
| Q |
176 |
gtcgacattactgacctgcaa-------atttcatttaagaagaattttgtaattaatttcttat |
233 |
Q |
| |
|
||| | || ||| ||||||| ||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
6177399 |
gtcaaaatcactaccctgcaatgttgatatttcatttaagaagcattttgcaattaatttcttat |
6177463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 6207293 - 6207340
Alignment:
| Q |
283 |
tttaatcagatagtctatccgttatttgttataggttcatcaaccatc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
6207293 |
tttaatcagatagtctatccgttatttgctatagattcatctaccatc |
6207340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University