View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12498_low_6 (Length: 324)
Name: NF12498_low_6
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12498_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 48412142 - 48411844
Alignment:
| Q |
12 |
aagaagaagaaaattgagtgttcacttgagttggaatctttgaatttggatccagaaaatattgcacgtgttgttcccggaaggataacccaaatgcggt |
111 |
Q |
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| T |
48412142 |
aagaagaagaaaattgagtgttcacttgagttggaatctttgaatttggatccagaaaatattgcacgtgttgttcccggaaggataacccaaatgcggt |
48412043 |
T |
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| Q |
112 |
tttgcccttccaatgatgttaagatggtggcagcgggtaacaaattcggggatattgggttctggaatgttggagaaagtgagannnnnnngtatcatcc |
211 |
Q |
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| T |
48412042 |
tttgcccttccaatgatgttaagatggtggcagcgggtaacaaattcggtgatattgggttctggaatgttggagaaagtgagatttttttgtatcatcc |
48411943 |
T |
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| Q |
212 |
acatcaggctcctatttctgggatcttgtttcaaccgcattgcttatcaaaggtttgtgaattcttaatctcgatttctgaatcagtttgttatttttg |
310 |
Q |
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| T |
48411942 |
acatcaggctcctatttctgggatcttgtttcaaccgcattgcttatcaaaggtttgtgaattcttaatctcgatttctgaatcagtttgttatttttg |
48411844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 48418695 - 48418433
Alignment:
| Q |
17 |
gaagaaaattgagtgttcacttgagttggaatctttgaatttggatccagaaaatattgcacgtgttgttcc---cggaaggataacccaaatgcggttt |
113 |
Q |
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| T |
48418695 |
gaagaaaattgagtgttcacttgagttggaatctttgtctttggatcgtaaaaatatagcacgtgttgttcctgacggcggcataactcacttgcgattt |
48418596 |
T |
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| Q |
114 |
tgcccttccaatgatgttaagatggtggcagcgggtaacaaattcggggatattgggttctggaatgttggagaaagtgagannnnnnngtatcatccac |
213 |
Q |
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| T |
48418595 |
ttaccttccaatgatttcaagatggtagtagccggtaacagagtcggggatattgggttctggaatgttggagaaagtgaggtttttgtgtaccatccac |
48418496 |
T |
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| Q |
214 |
atcaggctcctatttctgggatcttgtttcaaccgcattgcttatcaaaggtttgtgaattct |
276 |
Q |
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| T |
48418495 |
atcaggctcccatttctgggatctccattcacccacattgcttgtcaaaggtgtgtgaattct |
48418433 |
T |
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