View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12498_low_7 (Length: 305)

Name: NF12498_low_7
Description: NF12498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12498_low_7
NF12498_low_7
[»] chr2 (2 HSPs)
chr2 (16-286)||(8323603-8323873)
chr2 (173-221)||(40095872-40095920)
[»] chr6 (2 HSPs)
chr6 (16-154)||(14453471-14453609)
chr6 (16-154)||(21729898-21730036)
[»] chr1 (3 HSPs)
chr1 (52-154)||(14648491-14648593)
chr1 (174-217)||(50428560-50428603)
chr1 (174-219)||(7386289-7386334)
[»] chr3 (1 HSPs)
chr3 (19-154)||(51140240-51140378)
[»] chr5 (1 HSPs)
chr5 (16-154)||(14274878-14275019)
[»] chr7 (1 HSPs)
chr7 (173-217)||(23772821-23772865)
[»] chr4 (1 HSPs)
chr4 (172-219)||(19485863-19485910)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 8323603 - 8323873
Alignment:
Q  16 atgaacgatactataaagtcgaaagtaaccaagagacccctacaatgaactagcaggtccccaagctcgttgtgtaaaggtgaagaagagtttatggcat 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8323603 atgaacgatactacaaagtcgaaagtaaccaagagacccctacactgaactagcaggtccccaagctcgttgtgtaaaggtgaagaagaatttatggcat 8323702  T
Q  116 ctgcaagcaacttgctgtctgtttcaaacataacattgtctaaatatattgagagaagtccatttataccacccatattaatgacatggctgtggatgct 215  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8323703 ctgcaagcaacttgctctctgtttcaaacataacattgtttaaatatattgagagaagtccatttataccacccatattaatgacatggctgcggatgct 8323802  T
Q  216 ctaagtagcaacataagagttgtgatattgtctcaacatgttgaaagtagtctatcttttgaaggtcgagc 286  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8323803 ctaagtagcaacataagagttgtgatattgtctcagcatgttgaaagtagtctatcttttgaaggtcgagc 8323873  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 40095872 - 40095920
Alignment:
Q  173 gtccatttataccacccatattaatgacatggctgtggatgctctaagt 221  Q
    |||||||||||||||| | || |||||||| | ||||||||||||||||    
T  40095872 gtccatttataccaccaaaatgaatgacatagatgtggatgctctaagt 40095920  T

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Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 14453471 - 14453609
Alignment:
Q  16 atgaacgatactataaagtcgaaagtaaccaagagacccctacaatgaactagcaggtccccaagctcgttgtgtaaaggtgaagaagagtttatggcat 115  Q
    |||||| | |||| ||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  14453471 atgaacaacactacaaagtcgaaagtagccaagagggccctacactgaactagcaggtccccaagctcgttgtggaagagtgaagaagagtttatggcat 14453570  T
Q  116 ctgcaagcaacttgctgtctgtttcaaacataacattgt 154  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  14453571 ctgcaagcgacttgctgtctgtttcaaacataacattgt 14453609  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 21729898 - 21730036
Alignment:
Q  16 atgaacgatactataaagtcgaaagtaaccaagagacccctacaatgaactagcaggtccccaagctcgttgtgtaaaggtgaagaagagtttatggcat 115  Q
    |||||||| |||| |||||||||||||  |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21729898 atgaacgacactacaaagtcgaaagtagacaagaggcccctactctgaactagcaggtccccaagctcgttgtgtaaaggtgaagaatagtttatggcat 21729997  T
Q  116 ctgcaagcaacttgctgtctgtttcaaacataacattgt 154  Q
    |||||||  ||||| ||||||||||||||||||||||||    
T  21729998 ctgcaagtgacttgttgtctgtttcaaacataacattgt 21730036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 14648593 - 14648491
Alignment:
Q  52 cccctacaatgaactagcaggtccccaagctcgttgtgtaaaggtgaagaagagtttatggcatctgcaagcaacttgctgtctgtttcaaacataacat 151  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  14648593 cccctacactgaactagcaggtccccaagctcgttgtggaagggtgaagaagagtttatggcatctgcaagcgacttgctgtctgtttcaaacagaacat 14648494  T
Q  152 tgt 154  Q
    |||    
T  14648493 tgt 14648491  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 50428560 - 50428603
Alignment:
Q  174 tccatttataccacccatattaatgacatggctgtggatgctct 217  Q
    |||||||||||||||||||| |||||||||| | ||||||||||    
T  50428560 tccatttataccacccatatgaatgacatggatatggatgctct 50428603  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 7386334 - 7386289
Alignment:
Q  174 tccatttataccacccatattaatgacatggctgtggatgctctaa 219  Q
    |||||||||||||||||||| |||||||||  ||||| ||||||||    
T  7386334 tccatttataccacccatataaatgacatgaatgtggttgctctaa 7386289  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 51140240 - 51140378
Alignment:
Q  19 aacgatactataaagtcgaaa---gtaaccaagagacccctacaatgaactagcaggtccccaagctcgttgtgtaaaggtgaagaagagtttatggcat 115  Q
    ||||| ||||||||||||||    ||| |||||||||||||||| ||||||||||||||||| ||||| ||||| || | |||||||||  |||||||||    
T  51140240 aacgacactataaagtcgaagttggtagccaagagacccctacactgaactagcaggtccccgagctcattgtggaaggatgaagaagaaattatggcat 51140339  T
Q  116 ctgcaagcaacttgctgtctgtttcaaacataacattgt 154  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  51140340 ctgcaagcaacttgctgtcagtttcaaacataacattgt 51140378  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 14274878 - 14275019
Alignment:
Q  16 atgaacgatactataaagtcgaaa---gtaaccaagagacccctacaatgaactagcaggtccccaagctcgttgtgtaaaggtgaagaagagtttatgg 112  Q
    |||||||| |||| ||||||||||   ||  |||||||||||||||| ||| ||| |||| |||| ||||| ||||| |  | |||||||||| ||||||    
T  14274878 atgaacgacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggcccccgagctcattgtggattgttgaagaagagcttatgg 14274977  T
Q  113 catctgcaagcaacttgctgtctgtttcaaacataacattgt 154  Q
    | ||||||||| ||||| ||||  ||||||||||||||||||    
T  14274978 cttctgcaagcgacttgttgtccttttcaaacataacattgt 14275019  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 23772865 - 23772821
Alignment:
Q  173 gtccatttataccacccatattaatgacatggctgtggatgctct 217  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||    
T  23772865 gtccatttataccacccatatgaatgacatggatgtggatgctct 23772821  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 19485863 - 19485910
Alignment:
Q  172 agtccatttataccacccatattaatgacatggctgtggatgctctaa 219  Q
    ||||||||||||||||||||||  ||||||||| ||||| ||||||||    
T  19485863 agtccatttataccacccatatggatgacatggatgtgggtgctctaa 19485910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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