View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12499_high_1 (Length: 691)
Name: NF12499_high_1
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 19 - 614
Target Start/End: Original strand, 38930996 - 38931593
Alignment:
| Q |
19 |
actaatctcagctctatcatttgttttgaaaactatgtattccaatccctcactctccgcctgttctgccaccgcgaaattctgcggcaccaccaacaat |
118 |
Q |
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| T |
38930996 |
actaatctcagctctatcatttgttttgaaaactatgtattccaatccctcactctccgcctgttctgccactgcgaaattctgcggcaccaccaacaat |
38931095 |
T |
|
| Q |
119 |
cttcccctttttacctctccattgaacaccgattttccctcactattcaccacttgaaccctccctcttcctcttgttacatacattatgctgttcgcat |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38931096 |
cttcccctttttacctctccattgaacactgattttccctcactattcaccacttgaaccctccctcttcctcttgttacgtacattatgctgttcgcat |
38931195 |
T |
|
| Q |
219 |
tcatgttccaatgtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttcaatgta--acacgtgacttc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
38931196 |
tcatgttccaatgtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttcagtgtctgacacgtgacttc |
38931295 |
T |
|
| Q |
317 |
tgcaatacagaattgcagaatgatgcacttatttagttaccttgtagaggtaaacccattgggcactaagatgaagcaatttgagaactgggagagtcaa |
416 |
Q |
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|||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931296 |
tgcaattcataattgcagaatgatgcacttatttaattaccttgtagaggtaaacccattgggcactaagatgaagcaatttgagaactgggagagtcaa |
38931395 |
T |
|
| Q |
417 |
actattgacattcgttatacgacctgctcttgggttaaacacatcggcacgtgaaggatcagctatgttctcatgaagcttcaatgtgcaaacggtttca |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38931396 |
actattgacattcgttatacgacctgctcttgggttaaacacatcggcacgtgaaggatcagctatgttctcatgaagcttcaatgtgcaaacagtttca |
38931495 |
T |
|
| Q |
517 |
tcgaagaagttgtgttgttcttcatgttctctggttcttgttctctcaccatggcttctttctttttcaccatggtgacaatgctctttagtttttgt |
614 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931496 |
tcgaagaagttgtgttgtccttcatgttctctggttcttgttctctcaccatggcttctttctttttcaccatggtgacaatgctctttagtttttgt |
38931593 |
T |
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