View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12499_high_4 (Length: 274)
Name: NF12499_high_4
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 13397891 - 13398131
Alignment:
| Q |
11 |
caaaggcaaaatgaatcgaattattgtttacaaaaagacaatttaatttaaatcattttgatatcattttctctgattcaaatcaaaatagagatgattc |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13397891 |
caaaggcaaaatgaatctaattattgtttacaaaaagacaatttaatttaaatcattttgatatcattttctctgattcaaatcaaaatagggatgattc |
13397990 |
T |
|
| Q |
111 |
aaatctatcttctcctaggatcaatgattcaaattaaagttttaatgattcgaatcaatctttatagtaacttacatttcagtttttgcactaatgattc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13397991 |
aaatctatcttctcctaggatcaatgattcaaattaaagttttaatgattcgaatcaatctttatagtaacttacatttcagtttttgcactaatgattc |
13398090 |
T |
|
| Q |
211 |
aaatcatgatttaatgatttgaattaaacacatattttcaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13398091 |
aaatcatgatttaatgatttgaattaaacacatattttcaa |
13398131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University