View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12499_low_10 (Length: 313)
Name: NF12499_low_10
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 26275162 - 26275450
Alignment:
| Q |
9 |
gagaagaaacaagtgggaaaataaatataaagaactcagccaagtggcagctgagtaataaacaaaaggttgtttaaggttacttgtgactgacaaattg |
108 |
Q |
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| T |
26275162 |
gagaagaaacaagtgg-aaaataaatataaagaactcagccaagtggcagctgagtaataaacaaaaggttgtttaaggttacttgtgactgacaaattg |
26275260 |
T |
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| Q |
109 |
tcgaggatgtgaatatgaagcccaaactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactaactaacatgaaatcttacaccaggt |
208 |
Q |
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| T |
26275261 |
tcgaggatgtgaatatgaagatcaaactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactacctaacatgaaatattacaccaggt |
26275360 |
T |
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| Q |
209 |
agaaaatgtcgaccatattgcttgtatgtgaagtttcatttggcctgctattatgttgcgggtttatgacatgtattttggcactgatgt |
298 |
Q |
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| T |
26275361 |
agaaaatgtcgaccatattgcttgtatgtgaagtttcatttggcctgctattatgttgcgggtttatgacatgtattttggcactgatgt |
26275450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 26250885 - 26250817
Alignment:
| Q |
133 |
aactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactaactaacatgaaatcttac |
201 |
Q |
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| T |
26250885 |
aactgaagatgggaaaggtgagaaagttggtattgcaggtggtagaaactacctaacatgaaatcttac |
26250817 |
T |
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