View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12499_low_12 (Length: 248)
Name: NF12499_low_12
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4867290 - 4867078
Alignment:
| Q |
1 |
aaaaaatcaacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaatc |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4867290 |
aaaaaatctacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaatc |
4867191 |
T |
|
| Q |
101 |
agggtttattagagacaccttgaagtaactcattcttttattgccatagttgttgtcag--atacttctaaattgcttgacaaggatacaatttcaaatt |
198 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
4867190 |
agggtttactagagacaccttgaagtaactcattcttttattgccatagttgttgtcagatatacttctaaattgcctgacaaggatacaatttcaaatt |
4867091 |
T |
|
| Q |
199 |
aaccctataacaa |
211 |
Q |
| |
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|||||||||||| |
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| T |
4867090 |
gaccctataacaa |
4867078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4244721 - 4244588
Alignment:
| Q |
1 |
aaaaaatcaacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaatc |
100 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||| |||||||| |||||| |
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| T |
4244721 |
aaaaaatcaacataaattgtttatcatatgagaacaatacctttaccaatgatgccgcaataagcttatcaacaactacgcctgccaaaaggtgtgaatt |
4244622 |
T |
|
| Q |
101 |
agggtttattagagacaccttgaagtaactcatt |
134 |
Q |
| |
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|| | | |||||||||||| |||| ||||||| |
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|
| T |
4244621 |
cggagtaagtagagacaccttaaagttactcatt |
4244588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 4814138 - 4814042
Alignment:
| Q |
2 |
aaaaatcaacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaa |
98 |
Q |
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|||||| |||||||| | || ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||| |
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| T |
4814138 |
aaaaataaacataaagtgtccatcatttgagagcaatacctttactaatgatgctgcaataagcttatcagcaactacgcctgccaaaaggcgtgaa |
4814042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 4251361 - 4251240
Alignment:
| Q |
2 |
aaaaatcaacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaatca |
101 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||| ||||||||||||| |||||||| |||| ||||||||||||||| | ||||||||||||||| | |
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|
| T |
4251361 |
aaaaatcaacataaattgtatatcatttaagaacgatacctttactaacgatgccgcgataagcttatcagcaactacgacccccaaaaggcgtgaatta |
4251262 |
T |
|
| Q |
102 |
gggtttattagagacaccttga |
123 |
Q |
| |
|
|| | | |||||||||||||| |
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|
| T |
4251261 |
ggagtaagtagagacaccttga |
4251240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 3409915 - 3410083
Alignment:
| Q |
1 |
aaaaaatcaacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaatc |
100 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||||||||| | ||||| ||||||| ||||| ||| || |||||| ||||| ||||| |||| |
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| T |
3409915 |
aaaaaatcaacataaattgtttatcatttgaaaacaatacctttactgaagatgctgcaataagcttattagccaccacacctcccaaagggcgtaaatc |
3410014 |
T |
|
| Q |
101 |
agggtttattagagacaccttgaagtaactcattcttttattgccatagttgttgtcagatacttctaa |
169 |
Q |
| |
|
||| | ||||||||||| |||| || |||||||||| ||| ||||||||| |||||||||| |
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|
| T |
3410015 |
aggacccaccagagacaccttaaagttacccattcttttacaaccactattgttgtcacatacttctaa |
3410083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 7159145 - 7158937
Alignment:
| Q |
2 |
aaaaatcaacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaatca |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||||||||||| |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7159145 |
aaaaatcaacatgaattatctatcatttgtgagcaatacctttaccaatgatgctgcaataagcttatcagcaactacaccttccaaaaggcgtgaatca |
7159046 |
T |
|
| Q |
102 |
gggtttattagagacaccttgaagtaactcattcttttattgccatagttgttgtcagatacttctaaattgcttgacaaggatacaatttcaaattaac |
201 |
Q |
| |
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| |||| |||||||||||||||||||||||||||| ||||| | |||||||||| | ||||||||||| | | ||||||||||||||||||| || |
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| T |
7159045 |
gtgtttgctagagacaccttgaagtaactcattcttatattgtcgctgttgttgtcataaacttctaaattcccaaataaggatacaatttcaaattgac |
7158946 |
T |
|
| Q |
202 |
cctataaca |
210 |
Q |
| |
|
||||||||| |
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|
| T |
7158945 |
cctataaca |
7158937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14426981 - 14427070
Alignment:
| Q |
1 |
aaaaaatcaacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaa |
90 |
Q |
| |
|
||||||||||||||||| || |||||||||||| ||||||||||| || ||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
14426981 |
aaaaaatcaacataaatcatttatcatttgagagaaatacctttacgaaggatgccgcaataagcttatcagcaactacacctcccaaaa |
14427070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 14416927 - 14417090
Alignment:
| Q |
3 |
aaaatcaacataaattatctatcatttgagaacaatacctttactaatgatgccgcaataaacttatcagcaactacacctaccaaaaggcgtgaatcag |
102 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| ||||||||||| |||||||| ||||||| ||||| ||||||||||| | |||| ||||| || |
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|
| T |
14416927 |
aaaatcaacataaattatgtatcacttgagagaaatacctttaccaatgatgcagcaataagcttat---caactacacctccaaaaacatttgaattag |
14417023 |
T |
|
| Q |
103 |
ggtttattagagacaccttgaagtaactcattcttttattgccatagttgttgtcagatacttctaa |
169 |
Q |
| |
|
| | | |||||||||| | |||||| ||||||| ||| ||||| ||||||||| |||||||||| |
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| T |
14417024 |
gttccactagagacaccgtaaagtaattcattctcttaaagccattattgttgtcaaatacttctaa |
14417090 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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