View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12499_low_14 (Length: 243)
Name: NF12499_low_14
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 4867651 - 4867439
Alignment:
| Q |
19 |
gctggtacatcgacatggtaggaatgggttggataatattattgtagatttcaggccgttggcaaaaaagattattctcattgacacctaaggactcaga |
118 |
Q |
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| T |
4867651 |
gctggtacatcgacatggtaggaatgggttggataatcttattgtagatttcaggccgttggcaaaaaagattattctcattgacacctaaggactcaga |
4867552 |
T |
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| Q |
119 |
ttaaggcccttgagtggtcgcattggttggagtcccaaaagcaacaagttgggacaatgacgctgaagaaggttcatatttcaggttattcaggccattc |
218 |
Q |
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| T |
4867551 |
tgaaggcccgtgagtggtcgcattggttggagttccaaaagcaacaagttgggacaatgatgctgaagaaggttcatatttcaggttattcaggccattc |
4867452 |
T |
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| Q |
219 |
tttttgccatcca |
231 |
Q |
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| T |
4867451 |
tttttgccatcca |
4867439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 7159506 - 7159312
Alignment:
| Q |
19 |
gctggtacatcgacatggtaggaatgggttggataatattattgtagatttcaggccgttggcaaaaaagattattctcattgacacctaaggactcaga |
118 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||| ||| ||| || ||||| |||| ||||||| || ||| |||||||||||| ||| |
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| T |
7159506 |
gctggtacatcgacatagtaggaatgggttggatagtattattgtatattgcagtcccttggctaaaaggattattttctttgtcacctaaggactgaga |
7159407 |
T |
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| Q |
119 |
ttaaggcccttgagtggtcgcattggttggagtcccaaaagcaacaagttgggacaatgacgctgaagaaggttcatatttcaggttattcaggc |
213 |
Q |
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| T |
7159406 |
tgaatgcccttgagtggtcacatcggtttgagttccatcattaacaagtttaggcaatggcgctgaagaaaattcatattccaggttattcaggc |
7159312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 14416676 - 14416732
Alignment:
| Q |
116 |
agattaaggcccttgagtggtcgcattggttggagtcccaaaagcaacaagttggga |
172 |
Q |
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|||| |||| ||||||||||| ||| | |||||||||||||||||| ||| |||||| |
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| T |
14416676 |
agatgaaggaccttgagtggtagcactagttggagtcccaaaagcagcaaattggga |
14416732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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