View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12499_low_2 (Length: 544)
Name: NF12499_low_2
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 47689139 - 47688752
Alignment:
| Q |
16 |
gtttatacgcatttgttgcaaaaatgggaaaactctctagcaatgattctaaacatcaccaaaaggcaatacataaaacactaaagaaaacagttaaggt |
115 |
Q |
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| T |
47689139 |
gtttatacgcctttgttgcaaaaatgggaaaactctctagcaatgattctaaacatcaccaaaaggcaatacataaaacactaaagaaaacagttaaggt |
47689040 |
T |
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| Q |
116 |
aacctatatatctaatcctatactgttaagggattgccatgcttctgagttcagatcattagttcaacacctcacaggtaaaaactccaacaatttcact |
215 |
Q |
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| T |
47689039 |
aacctatatatctaatcctatactgttaagggattgccatgcttctgagttcagatcattagttcaacacctcacaggtaaaaactccaacaatttcact |
47688940 |
T |
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| Q |
216 |
catcaaagcattcctctgcatatgcacaatgatcatttggaccacccaccactcgcaattgcagctacatcggctgaagatgtgagcaccacatattaca |
315 |
Q |
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| T |
47688939 |
catcaaagcattcctctgcatatgcacaatgatcatttggaccacccaccactcacaattgcagctacatcggctgaagatgtgagcaccacatattaca |
47688840 |
T |
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| Q |
316 |
acagatcaatggatatggattctttcgagttcgatgtagtagattacttttggaaagaagttgctatttgctttccactgacatatgcaattac |
409 |
Q |
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| T |
47688839 |
acagatcaat------ggattctgtcaagttcgatgtaatagattacttttggaaagaagttgctatttgctttccactgacatatgcaattac |
47688752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 404 - 544
Target Start/End: Complemental strand, 47688711 - 47688570
Alignment:
| Q |
404 |
aattaccgctactaagttcatttaataatatgatttcattgagtactcaattgtattccttcactcagtatatcattgaat-aatatgatttcattttca |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47688711 |
aattaccgctactaagttcatttaataatatgatttcattgagtactcaattgtattccttcactcagtatatcattgaataaatatgatttcattttca |
47688612 |
T |
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| Q |
503 |
aattctctcaattactcaacatggtttcagagcgggattttc |
544 |
Q |
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| T |
47688611 |
aattctctcaattactcaacatggtttcagagcgggattttc |
47688570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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