View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12499_low_5 (Length: 396)
Name: NF12499_low_5
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 31110427 - 31110064
Alignment:
| Q |
13 |
caaatccaacaagcagcaggaaggctattgactttattggaaggctagctctgatggatcaccccctcaagtcctcattcaatgggaatgctatatatga |
112 |
Q |
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| T |
31110427 |
caaatccaacaagcagcaggaaggctattgactttattggaaggctagctctgatgaatcaccccatcaagtcctcattcaatgggaatgctatatatga |
31110328 |
T |
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| Q |
113 |
aacttggtgattcaccctttcaataattccttttccttccgttatttgcgtttctgttgtaacagcctcaaagccttagattccttctatcataagcaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31110327 |
aacttggtgattcaccctttcaataattccttttccttccgtaatttgcgtttctgttgtaacagcctcaaagccttagattccttctatcatatgcaca |
31110228 |
T |
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| Q |
213 |
gccttgatgctatatatgtactagattgatgtatgtatgaagcatgaagtgaatattaaaggaagtagacaattaacaactgtagactcattcaaatatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31110227 |
gccttgatgctatatatgtactagattgatgtatgtatgaggcatgaagtgaatattaaaggaagtagacaattaacaactatagactcattcaaatatg |
31110128 |
T |
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| Q |
313 |
ttgagtttacgcttgttaagtaccatgctgatatgttgatttttccattttgtaactattatgt |
376 |
Q |
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| T |
31110127 |
ttgagtttacgcttgttaagtaccatgctgatatgttgatttttccattttgtaactgttatgt |
31110064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 49 - 252
Target Start/End: Complemental strand, 31051889 - 31051685
Alignment:
| Q |
49 |
ttggaaggctagctctgatggatcaccccctcaagtcctcattcaa-tgggaatgctatatatgaaacttggtgattcaccctttcaataattccttttc |
147 |
Q |
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| T |
31051889 |
ttggaaggctagctctgatggatcaccccctcaagtcctcattcaaatgggaatgctatatatgaaacttggtgattcaccctttcaataattccttttc |
31051790 |
T |
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| Q |
148 |
cttccgttatttgcgtttctgttgtaacagcctcaaagccttagattccttctatcataagcacagccttgatgctatatatgtactagattgatgtatg |
247 |
Q |
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||||||||||||||||||||| || | | |||||||||||||| ||||||||||| |||||||||||||| |||| ||||| || ||||||||| ||| |
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| T |
31051789 |
cttccgttatttgcgtttctggtgaatcggcctcaaagccttaagttccttctatcctaagcacagccttggtgctgaatatgcaccagattgatgaatg |
31051690 |
T |
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| Q |
248 |
tatga |
252 |
Q |
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|||| |
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| T |
31051689 |
catga |
31051685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 31080359 - 31080261
Alignment:
| Q |
279 |
agacaattaacaactgtagactcattcaaatatgttgagtttacgcttgttaa--gtaccatgctgatatgttgatttt---tccattttgtaactatt |
372 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
31080359 |
agacaattaacaactatagactcattcaaatatgttgagtctacgcttgttaattgtaccatgatgatatgttgattttttatccattttgtaactatt |
31080261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 31044164 - 31044128
Alignment:
| Q |
101 |
tgctatatatgaaacttggtgattcaccctttcaata |
137 |
Q |
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|||||||||||||| ||||||||||||| |||||||| |
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| T |
31044164 |
tgctatatatgaaagttggtgattcaccttttcaata |
31044128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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