View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12499_low_6 (Length: 375)
Name: NF12499_low_6
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 206 - 373
Target Start/End: Complemental strand, 4055271 - 4055104
Alignment:
| Q |
206 |
tcaactcctctacttataaagtaaccattcaacctcaacgttgatgggtctaacccaaaagctatagctatggaaccaagatcaannnnnnnatcatcac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4055271 |
tcaactcctctacttataaagtaaccattcaacctcaacgttgatgggtctaacccaaaagctatagctatggaaccaagatcaattttttcatcatcac |
4055172 |
T |
|
| Q |
306 |
aagtaacaagttcaacactttttgactttgagagtgaagggcataacagtaatatctttgtttctctg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4055171 |
aagtaacaagttcaacactttttgactttgagagtgaagggcataacagtgatatctttgtttctctg |
4055104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 4055405 - 4055324
Alignment:
| Q |
73 |
cttgacaaaca-tacccttgttaacatctttgccagtaacaacaatagcatcatggttacttttcccagtagacaaacctct |
153 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4055405 |
cttgacaaacaatacccttgttaacatctttgccagtaacaacaatagcatcatggttacttttcccagtagacaaacctct |
4055324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University