View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12499_low_8 (Length: 357)
Name: NF12499_low_8
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 33338349 - 33338032
Alignment:
| Q |
16 |
ctaggatcatcacgagcactgcaatcaacttcgtattccaattgtgagattgaatctacattaaatttaaagatagtcaatcaatgtaaagcattaaaca |
115 |
Q |
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| T |
33338349 |
ctaggatcatcacgagcatggcaatcaacttcgtattccaattgtgagattgaatctacattaaatttaaagatagtcaatcaatgaaaagcattaaaca |
33338250 |
T |
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| Q |
116 |
tagaagtaattactcaataagcatgaataaaactagtattgaagcaatgtgagtcatacttgcacaagaatctaacaaaggttcatcatccctaaccaaa |
215 |
Q |
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| T |
33338249 |
tagaagtaattactcaataagcatgaataaaactagtattgaagcaatgtgagtcatacttacacaagaatctaacaaaggttcatcatccctaaccaaa |
33338150 |
T |
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| Q |
216 |
tataaacacttatataatgggataagaaacaggtaaagataagaagaaaaactagggttttttacattcaaatttcagtagtcccctacagttgcactat |
315 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
33338149 |
tataaacacctacataatgggataagaaacaggtaaagataagaagaaaaactagggtttcttacattcaaatttcagtagtcccctaccgttgcactat |
33338050 |
T |
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| Q |
316 |
cattcaaggtgtttttgg |
333 |
Q |
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| T |
33338049 |
cgttcaaggtgtttttgg |
33338032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 33338420 - 33338374
Alignment:
| Q |
16 |
ctaggatcatcacgagcactgcaatcaacttcgtattccaattgtga |
62 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33338420 |
ctaggatcatcacgagcactgcaatcaacttcgtattccaattgtga |
33338374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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