View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12499_low_9 (Length: 333)
Name: NF12499_low_9
Description: NF12499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12499_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 6035889 - 6035771
Alignment:
| Q |
1 |
gcagagaagaggagagaagattcttttattctcttgtattgtgttaacacaagaactctgatctctctatttatnnnnnnntacaataatataacttggg |
100 |
Q |
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| T |
6035889 |
gcagagaagaggagagaagattcttttattctcttgtattgtgtta-cacaagaactctgatctct--atttataaaaaaatacaataatataacttggg |
6035793 |
T |
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| Q |
101 |
agacaagtacatcggtttaact |
122 |
Q |
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| T |
6035792 |
agacaagtacatcggtttaact |
6035771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 6035697 - 6035627
Alignment:
| Q |
262 |
ttggttgattgatttagccaatttttggagtactgaagaccttattaaattcatcaacatacaatcgaactc |
333 |
Q |
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| T |
6035697 |
ttggttgattgatt-agccaatttttggagtactgaagacattattaaattcatcaacatacaatcgaactc |
6035627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 6085511 - 6085590
Alignment:
| Q |
253 |
gaacaatatttggttgattgatttagccaatttttggagtactgaagaccttattaaattcatcaacatacaatcgaactc |
333 |
Q |
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| T |
6085511 |
gaacaatatttagttgat-gaatcaaccaattattggagtcctaatgaccttattagattcatcaacatacaatcgaactc |
6085590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 6035775 - 6035733
Alignment:
| Q |
143 |
taactcaatagtttaacggacatccactttatattattaataa |
185 |
Q |
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| T |
6035775 |
taactcaatagtttaatggaaatccactttatattattaataa |
6035733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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