View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_high_1 (Length: 531)
Name: NF1249_high_1
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 305 - 504
Target Start/End: Complemental strand, 35382543 - 35382344
Alignment:
| Q |
305 |
tattcgatatttccttgacatgtcacattaatcgtatttggtaagccattaagatcagacagaagaaaagtcaccaaagtgaaagggaaaacaaataaat |
404 |
Q |
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| T |
35382543 |
tattcgatatttccttgacatgtcacattaatcgtatttggtaagccattaagatcagacagaagaaaagtcaccaaagtgaaagggaaaacaaataaat |
35382444 |
T |
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| Q |
405 |
aaaaaattgagttgattgagagagaataaaatccatttacttcaatatcaaggaacgtagtttcactttcgcccactcaaatgaaatctaattgtgctat |
504 |
Q |
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| T |
35382443 |
aaaaaattgagttgattgagagagaataaaatccatttacttcaatatcaaggaacgtagtttcactttcgcccactcaaatgaaatctaattgtgctat |
35382344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 35382715 - 35382578
Alignment:
| Q |
50 |
agacttatcccaatgatctaattacaaaggtacaggaaattaaggcatgagccacagggtgtcagtcaaatagtacgaccggattgtgcaacccaagatt |
149 |
Q |
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| T |
35382715 |
agacttatcccaatgatctaattacaaaggtacaggaaattaaggcatgagccacagggtgtcagtcaaatagtacgaccggattgtgcaacccaagatt |
35382616 |
T |
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| Q |
150 |
aattttgaaaaataagggcacaaataatgggaatggat |
187 |
Q |
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| T |
35382615 |
aattttgaaaaataagggcacaaataatgggaatggat |
35382578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 35387740 - 35387657
Alignment:
| Q |
90 |
taaggcatgagccacagggtgtcagtcaaatagtacgaccggattgtgcaacccaagattaattttgaaaaataagggcacaaata |
175 |
Q |
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| T |
35387740 |
taaggcatgagccacaag-tatctgtcaaatagtacaaccgaattgtgcagcccaatattaattttg-aaaataagggcacaaata |
35387657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 35382579 - 35382541
Alignment:
| Q |
237 |
atcctcttagtttatgacttatgtgctcaaatgctctat |
275 |
Q |
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| T |
35382579 |
atcctcttagtttatgacttatgtgctcaaatgctctat |
35382541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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