View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_high_15 (Length: 317)

Name: NF1249_high_15
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_high_15
NF1249_high_15
[»] chr3 (3 HSPs)
chr3 (77-221)||(29570339-29570483)
chr3 (149-221)||(29035314-29035385)
chr3 (149-209)||(8029247-8029307)
[»] chr8 (4 HSPs)
chr8 (119-221)||(37165182-37165284)
chr8 (119-221)||(9261262-9261364)
chr8 (113-221)||(37973421-37973525)
chr8 (149-187)||(31645146-31645184)
[»] chr4 (4 HSPs)
chr4 (119-217)||(19401697-19401795)
chr4 (153-194)||(40197876-40197917)
chr4 (149-181)||(18489662-18489694)
chr4 (150-194)||(24699430-24699474)
[»] chr1 (3 HSPs)
chr1 (120-208)||(44686263-44686351)
chr1 (149-209)||(28651043-28651103)
chr1 (153-216)||(22023144-22023207)
[»] chr2 (7 HSPs)
chr2 (155-221)||(12115301-12115367)
chr2 (149-208)||(29927731-29927790)
chr2 (119-198)||(41505710-41505789)
chr2 (149-194)||(6069197-6069242)
chr2 (151-208)||(32979004-32979061)
chr2 (149-209)||(35494971-35495031)
chr2 (177-221)||(38283977-38284021)
[»] chr6 (3 HSPs)
chr6 (124-221)||(34205914-34206011)
chr6 (149-214)||(33929935-33930000)
chr6 (149-198)||(4333024-4333073)
[»] scaffold0102 (1 HSPs)
scaffold0102 (161-221)||(31400-31460)
[»] chr7 (4 HSPs)
chr7 (138-208)||(5038325-5038395)
chr7 (119-208)||(41639691-41639780)
chr7 (138-181)||(24972959-24973002)
chr7 (138-198)||(23961664-23961724)
[»] scaffold0067 (1 HSPs)
scaffold0067 (138-208)||(15291-15361)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 29570483 - 29570339
Alignment:
Q  77 tgctgtttattattgtgaaggctagcagaaacaccgatttaacccaattttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgcc 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  29570483 tgctgtttattattgtgaaggctagcagaaacaccaatttaacccaattttcttcggcagctaactaccgccggttaaaatccatcagcagttaactgcc 29570384  T
Q  177 gatgagtttattttgatattttagcggtgttttccagcatccttt 221  Q
    |||||| |||||||| |||||||| ||||||||||||||||||||    
T  29570383 gatgaggttattttggtattttagaggtgttttccagcatccttt 29570339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 29035385 - 29035314
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagcatccttt 221  Q
    |||||||||||||| |||||||||| | ||| || |||||||| ||||||| | |||||| ||||||||||||    
T  29035385 ggttaaaatccatcagcagttaactactgataagattattttggtattttaac-gtgtttcccagcatccttt 29035314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 8029247 - 8029307
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgtttt 209  Q
    ||||||||  ||||||||||||| |||||||||| |||| ||| ||||||  |||||||||    
T  8029247 ggttaaaactcatcggcagttaattgccgatgaggttatattggtatttttccggtgtttt 8029307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 37165182 - 37165284
Alignment:
Q  119 cccaattttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagcatcc 218  Q
    |||| ||||||||||||| ||| |||| | |||||||| |||||| ||||||| |||||||||| |||||||||||||||| |||||||||||| ||| |    
T  37165182 cccatttttcttcggcagttaattaccgccggttaaaacccatcgtcagttaattgccgatgagattattttgatattttaacggtgttttccaacattc 37165281  T
Q  219 ttt 221  Q
    |||    
T  37165282 ttt 37165284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 9261262 - 9261364
Alignment:
Q  119 cccaattttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagcatcc 218  Q
    |||||||||||||||||| ||| ||   | ||||||||| ||| | |||||||  || |||||| |||||||  ||||||||||||||||||||||||||    
T  9261262 cccaattttcttcggcagttaattagggccggttaaaattcattgacagttaaaggctgatgaggttattttagtattttagcggtgttttccagcatcc 9261361  T
Q  219 ttt 221  Q
    |||    
T  9261362 ttt 9261364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 37973421 - 37973525
Alignment:
Q  113 atttaacc-caattttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttcc 211  Q
    |||||||| ||||||||||| |||| | ||||||   ||||||||| ||||| ||||||||||||||     |||||||||||||||| |||| ||| ||    
T  37973421 atttaacctcaattttcttcagcagttgactaccgtcggttaaaattcatcgacagttaactgccga-----ttattttgatattttaacggtttttccc 37973515  T
Q  212 agcatccttt 221  Q
    | ||||||||    
T  37973516 aacatccttt 37973525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 31645184 - 31645146
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttat 187  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  31645184 ggttaaaatccatcggcagttaagtgccgatgaggttat 31645146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 19401795 - 19401697
Alignment:
Q  119 cccaattttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagcatc 217  Q
    |||||||||||||||||| ||||||||   |||||||||| |||||||||||| || ||||||| |||||||| ||||||| |||||||| ||||||||    
T  19401795 cccaattttcttcggcagttaactaccgtcggttaaaatctatcggcagttaattgtcgatgaggttattttggtattttaacggtgtttcccagcatc 19401697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 40197917 - 40197876
Alignment:
Q  153 aaaatccatcggcagttaactgccgatgagtttattttgata 194  Q
    |||||||||||||||||||||||||||||  |||| ||||||    
T  40197917 aaaatccatcggcagttaactgccgatgaagttatattgata 40197876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 18489694 - 18489662
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatga 181  Q
    |||||||||||||| ||||||||||||||||||    
T  18489694 ggttaaaatccatcagcagttaactgccgatga 18489662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 24699430 - 24699474
Alignment:
Q  150 gttaaaatccatcggcagttaactgccgatgagtttattttgata 194  Q
    |||||||||||||||||||||||| |||||||  |||| ||||||    
T  24699430 gttaaaatccatcggcagttaactaccgatgatgttatgttgata 24699474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 44686351 - 44686263
Alignment:
Q  120 ccaattttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttt 208  Q
    ||||||||||||||||| ||| |||  | ||||||||| |||||||||||||||| ||||||  |||||||| ||||||||||||||||    
T  44686351 ccaattttcttcggcagttaattacatccggttaaaattcatcggcagttaactgtcgatgaaattattttggtattttagcggtgttt 44686263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 28651043 - 28651103
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgtttt 209  Q
    |||||||||||||||||||||||||| | ||||| |||||||| |||||| | ||||||||    
T  28651043 ggttaaaatccatcggcagttaactgtcaatgagattattttgttattttcgtggtgtttt 28651103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 22023207 - 22023144
Alignment:
Q  153 aaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagcat 216  Q
    |||||||||||||||||||||||||||||| |||| | | ||  |||  |||||||||||||||    
T  22023207 aaaatccatcggcagttaactgccgatgaggttatataggtaaattactggtgttttccagcat 22023144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 12115301 - 12115367
Alignment:
Q  155 aatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagcatccttt 221  Q
    ||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||    
T  12115301 aatccatcggccgttaactgccgatgaggttattttggtattttaacggtgttttccaacatccttt 12115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 29927790 - 29927731
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttt 208  Q
    |||||||||||||| ||||||||||||||||||| |||| ||| || ||| | |||||||    
T  29927790 ggttaaaatccatcagcagttaactgccgatgaggttatattggtaatttcgtggtgttt 29927731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 41505789 - 41505710
Alignment:
Q  119 cccaattttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatatttt 198  Q
    |||| ||||||||||||  ||||||||   |||||||||| ||||| |||||| ||||||| || |||||||| ||||||    
T  41505789 cccatttttcttcggcaattaactaccgttggttaaaatctatcggtagttaattgccgataaggttattttggtatttt 41505710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 6069197 - 6069242
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttattttgata 194  Q
    ||||||||| |||||||||||||||| ||||||| |||| ||||||    
T  6069197 ggttaaaattcatcggcagttaactgtcgatgagattatattgata 6069242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 32979061 - 32979004
Alignment:
Q  151 ttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttt 208  Q
    ||||||| ||||||||||||||| || |||||||||| |||||| ||| | |||||||    
T  32979061 ttaaaattcatcggcagttaactaccaatgagtttatattgataattttgtggtgttt 32979004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 35494971 - 35495031
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgtttt 209  Q
    ||||||||| ||||||||||||||||||||||   |||| |||||| ||| | ||||||||    
T  35494971 ggttaaaattcatcggcagttaactgccgatggagttatattgataatttcgtggtgtttt 35495031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 38283977 - 38284021
Alignment:
Q  177 gatgagtttattttgatattttagcggtgttttccagcatccttt 221  Q
    |||||| |||||||| |||||||| ||||||| ||||||||||||    
T  38283977 gatgagattattttggtattttagtggtgtttcccagcatccttt 38284021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 34206011 - 34205914
Alignment:
Q  124 ttttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagcatccttt 221  Q
    |||||||||||   |||||||| | | ||||||||||||| ||| |||||||||||||  |||| |||||||||||| ||||||| |||| |||||||    
T  34206011 ttttcttcggcgattaactaccgctgattaaaatccatcgacaggtaactgccgatgatgttatattgatattttagtggtgtttcccagtatccttt 34205914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 33929935 - 33930000
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagc 214  Q
    ||||||||||||||||||||||||| ||||||||  ||| ||||||  |||  |||||||||||||    
T  33929935 ggttaaaatccatcggcagttaactaccgatgagagtatattgataaattactggtgttttccagc 33930000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 4333024 - 4333073
Alignment:
Q  149 ggttaaaatccatcggcagttaactgccgatgagtttattttgatatttt 198  Q
    ||||||||| ||||| ||||||||| |||||||  |||||||||||||||    
T  4333024 ggttaaaattcatcgacagttaactcccgatgaagttattttgatatttt 4333073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 31460 - 31400
Alignment:
Q  161 tcggcagttaactgccgatgagtttattttgatattttagcggtgttttccagcatccttt 221  Q
    |||||||||||| ||||||||  |||||||||||||||| |||||||| ||||||||||||    
T  31460 tcggcagttaacggccgatgaagttattttgatattttaacggtgtttcccagcatccttt 31400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 5038325 - 5038395
Alignment:
Q  138 taactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttt 208  Q
    |||||||||| ||||||||||||||| |||||||||||||||||  |||||||  |||||| | |||||||    
T  5038325 taactaccacgggttaaaatccatcgtcagttaactgccgatgaagttattttagtattttcgtggtgttt 5038395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 41639780 - 41639691
Alignment:
Q  119 cccaattttcttcggcagctaactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttt 208  Q
    |||||||| | ||| ||| |||||||||  ||||||| || |||| | |||||||||||||||| |||||||| |||||| | |||||||    
T  41639780 cccaatttccatcgacagttaactaccatcggttaaactcgatcgaccgttaactgccgatgagattattttggtattttcgtggtgttt 41639691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 24973002 - 24972959
Alignment:
Q  138 taactaccacaggttaaaatccatcggcagttaactgccgatga 181  Q
    |||||||| | |||||||||||||||||||||||||| ||||||    
T  24973002 taactaccgccggttaaaatccatcggcagttaactgtcgatga 24972959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 23961664 - 23961724
Alignment:
Q  138 taactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatatttt 198  Q
    |||||||||| ||||||||||||| | |||||||||| ||| ||  |||| ||||||||||    
T  23961664 taactaccaccggttaaaatccattgacagttaactgtcgaagatgttatgttgatatttt 23961724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 15361 - 15291
Alignment:
Q  138 taactaccacaggttaaaatccatcggcagttaactgccgatgagtttattttgatattttagcggtgttt 208  Q
    |||||||||| ||||||||| | |||||||||||| | ||||||| |||||||| |||||| | |||||||    
T  15361 taactaccaccggttaaaattcgtcggcagttaacagtcgatgaggttattttggtattttcgtggtgttt 15291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University