View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_high_3 (Length: 479)
Name: NF1249_high_3
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 69 - 468
Target Start/End: Complemental strand, 232924 - 232525
Alignment:
| Q |
69 |
aaaaaatgccacatcggatggcttaaagataataatcggattatttaagtgtaaaatgtaaacaagtagtgacttggaatcaacaaccaaacttttgaac |
168 |
Q |
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| T |
232924 |
aaaaaatgccacatcggatggcttaaagataataatcggattatttaagtgtaaaatgtaaacaagtagtgacttggaatgaacaaccaaacttttgaac |
232825 |
T |
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| Q |
169 |
ttttgagaaatgtaaacccaatttaaataacggacaaaagaagtatgaaaattgctcattaggccctttgacttgcttgtatgtccctcgaattttcgaa |
268 |
Q |
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| T |
232824 |
ttttgagaaatgtaaacccaatttaaataacggacaaaagaagtatgaaaattgctcattaggccctttgacttgcttgtatgtccctcgaattttcgaa |
232725 |
T |
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| Q |
269 |
tttgaccctctccgttcgtaatccccgaaccgttcgatagttacgtcctgatacactgtgaatacatacaaaaaccaccatttgtggttcaaacctattt |
368 |
Q |
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| T |
232724 |
tttgaccctctccgttcgtaatccccgaaccgttcgatagttacgtcctgatacactgtgaatacatacaaaaaccaccatttgtggttcaaacctattt |
232625 |
T |
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| Q |
369 |
ccttgcactttccctccatactccaacaaatccaacctcaacgaaattcgtcaaactcaagttnnnnnnnnnnnncgtacgtggattgtgggtccttcat |
468 |
Q |
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| T |
232624 |
ccttgcactttccctccatactccaacaaatccaacctcaacgaaattcgtcaaactcaagttaaaaataaaaaacgtacgtggattgtgggtccttcat |
232525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 428
Target Start/End: Complemental strand, 10893049 - 10892960
Alignment:
| Q |
339 |
aaaaccaccatttgtggttcaaacctatttccttgcactttccctccatactccaacaaatccaacctcaacgaaattcgtcaaactcaa |
428 |
Q |
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| T |
10893049 |
aaaactaccatttgtgtttcaaactcattttcttacattttccttccctactccaacacatcaaacaccaacaaaattcgtcaaactcaa |
10892960 |
T |
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